Gene annotation
Transcriptome id Sobic.001G125200.1
Synonym Sb01g011010, emb2734
Functional annotation HEAT repeat family protein, putative, expressed
UniProt A0A1B6QIP9
Pfam PF02985 PF13646
Panther DB PTHR10527 PTHR10527:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G19820 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os03g49420.1 : HEAT repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a007740
Brachypodium KQK13657
Barley HORVU2Hr1G037470.1 , HORVU2Hr1G037470.6 , HORVU2Hr1G037470.5 , HORVU4Hr1G005950.3 , HORVU4Hr1G005950.2 , HORVU4Hr1G005950.1 , HORVU2Hr1G037470.7 , HORVU2Hr1G037470.9 , HORVU2Hr1G037470.8 , HORVU2Hr1G037470.3 , HORVU2Hr1G037470.2 , HORVU0Hr1G030200.2 , HORVU0Hr1G030200.1 , HORVU2Hr1G037470.13 , HORVU2Hr1G037470.12 , HORVU2Hr1G037470.11 , HORVU2Hr1G037470.10 , HORVU2Hr1G037470.14
Wheat TraesCS4D02G035900 , TraesCS4D02G035900 , TraesCS4A02G275500 , TraesCS4B02G038200
Populus PNT06879 , PNT06878 , PNT06877 , PNT06876 , PNT06880


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
2 Sobic.003G056100 transcription initiation factor, putative, expressed K03129: transcription initiation factor TFIID subunit 4
3 Sobic.007G207000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL15 - SBP-box gene family member, expressed -
4 Sobic.010G069100 expressed protein -
5 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
6 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
7 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
8 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
10 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
11 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
12 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
13 Sobic.007G096000 expressed protein -
14 Sobic.009G191000 MATH domain containing protein, expressed -
15 Sobic.001G540400 expressed protein -
16 Sobic.002G310200 expressed protein -
17 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
18 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
19 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
20 Sobic.004G331100 WD domain and HEAT domain containing protein, putative, expressed K08333: PIK3R4, phosphoinositide-3-kinase, regulatory subunit 4


Gene co-expression network
sample Sobic001G125200 Sobic001G125200 Sobic001G474600 Sobic001G474600 Sobic001G125200--Sobic001G474600 Sobic003G056100 Sobic003G056100 Sobic001G125200--Sobic003G056100 Sobic007G207000 Sobic007G207000 Sobic001G125200--Sobic007G207000 Sobic010G069100 Sobic010G069100 Sobic001G125200--Sobic010G069100 Sobic009G026500 Sobic009G026500 Sobic001G125200--Sobic009G026500 Sobic009G166300 Sobic009G166300 Sobic001G125200--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G125200--Sobic001G409600 Sobic002G006900 Sobic002G006900 Sobic001G125200--Sobic002G006900 Sobic007G217000 Sobic007G217000 Sobic001G125200--Sobic007G217000 Sobic003G280800 Sobic003G280800 Sobic001G474600--Sobic003G280800 Sobic001G474600--Sobic009G166300 Sobic001G474600--Sobic001G125200 Sobic003G372700 Sobic003G372700 Sobic001G474600--Sobic003G372700 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic001G474600--Sobic007G207000 Sobic009G191000 Sobic009G191000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200 Sobic003G056100--Sobic001G125200 Sobic003G056100--Sobic002G006900 Sobic008G067600 Sobic008G067600 Sobic003G056100--Sobic008G067600 Sobic001G512700 Sobic001G512700 Sobic003G056100--Sobic001G512700 Sobic001G497300 Sobic001G497300 Sobic003G056100--Sobic001G497300 Sobic002G315200 Sobic002G315200 Sobic003G056100--Sobic002G315200 Sobic009G104201 Sobic009G104201 Sobic003G056100--Sobic009G104201 Sobic003G087400 Sobic003G087400 Sobic003G056100--Sobic003G087400 Sobic003G056100--Sobic007G217000 Sobic007G207000--Sobic001G125200 Sobic007G207000--Sobic001G474600 Sobic003G101400 Sobic003G101400 Sobic007G207000--Sobic003G101400 Sobic007G207000--Sobic009G191000 Sobic001G196500 Sobic001G196500 Sobic007G207000--Sobic001G196500 Sobic001G540400 Sobic001G540400 Sobic007G207000--Sobic001G540400 Sobic004G351100 Sobic004G351100 Sobic007G207000--Sobic004G351100 Sobic002G309600 Sobic002G309600 Sobic007G207000--Sobic002G309600 Sobic001G050200 Sobic001G050200 Sobic007G207000--Sobic001G050200 Sobic002G071500 Sobic002G071500 Sobic010G069100--Sobic002G071500 Sobic002G264200 Sobic002G264200 Sobic010G069100--Sobic002G264200 Sobic005G112300 Sobic005G112300 Sobic010G069100--Sobic005G112300 Sobic008G047800 Sobic008G047800 Sobic010G069100--Sobic008G047800 Sobic008G009700 Sobic008G009700 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic007G065400 Sobic007G065400 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic001G365900 Sobic001G365900 Sobic009G026500--Sobic001G365900 Sobic007G126600 Sobic007G126600 Sobic009G026500--Sobic007G126600 Sobic008G192600 Sobic008G192600 Sobic009G026500--Sobic008G192600 Sobic001G214300 Sobic001G214300 Sobic009G026500--Sobic001G214300 Sobic010G153700 Sobic010G153700 Sobic009G026500--Sobic010G153700 Sobic009G026500--Sobic003G372700 Sobic001G290100 Sobic001G290100 Sobic009G026500--Sobic001G290100 Sobic009G026500--Sobic002G006900 Sobic002G008900 Sobic002G008900 Sobic009G026500--Sobic002G008900 Sobic009G166300--Sobic007G217000 Sobic003G408500 Sobic003G408500 Sobic009G166300--Sobic003G408500 Sobic009G166300--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic009G166300--Sobic007G011300 Sobic001G114000 Sobic001G114000 Sobic009G166300--Sobic001G114000 Sobic009G166300--Sobic008G047800 Sobic005G045300 Sobic005G045300 Sobic009G166300--Sobic005G045300 Sobic005G118600 Sobic005G118600 Sobic009G166300--Sobic005G118600 Sobic001G109800 Sobic001G109800 Sobic009G166300--Sobic001G109800 Sobic003G397800 Sobic003G397800 Sobic001G409600--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic001G409600--Sobic010G101800 Sobic002G297200 Sobic002G297200 Sobic001G409600--Sobic002G297200 Sobic001G409600--Sobic001G109800 Sobic001G409600--Sobic001G125200 Sobic001G409600--Sobic007G096000 Sobic009G249200 Sobic009G249200 Sobic001G409600--Sobic009G249200 Sobic003G187400 Sobic003G187400 Sobic001G409600--Sobic003G187400 Sobic001G016000 Sobic001G016000 Sobic001G409600--Sobic001G016000 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic009G040600 Sobic009G040600 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic007G217000--Sobic001G474600 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic002G310200 Sobic002G310200 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700
Octagon: transcription factors


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