Gene annotation
Transcriptome id Sobic.003G056100.1,Sobic.003G056100.2
Synonym TAF4, TAF4B, Sb03g004810
Functional annotation transcription initiation factor, putative, expressed
UniProt A0A1B6Q1M8
Pfam PF12174 PF05236
Panther DB PTHR15138 PTHR15138:SF16
NCBI CDD -
KEGG Orthology K03129; transcription initiation factor TFIID subunit 4
Gene Ontology GO:0006352; DNA-templated transcription, initiation GO:0005669transcription factor TFIID complex


Orthologs (automatic annotation)
TAIR AT5G43130 : TBP-associated factor 4
RAP-DB (Rice) LOC_Os02g43750.1 : transcription initiation factor, putative, expressed
MaizeGDB (Corn) Zm00025a053633 , Zm00025a023324 , Zm00025a023318
Brachypodium KQK00582
Barley HORVU6Hr1G062340.7 , HORVU6Hr1G062340.15 , HORVU6Hr1G062340.6 , HORVU6Hr1G062340.5 , HORVU6Hr1G062340.4 , HORVU6Hr1G062340.3 , HORVU6Hr1G062340.2 , HORVU6Hr1G062340.1 , HORVU6Hr1G062340.9 , HORVU6Hr1G062340.14 , HORVU6Hr1G062340.13 , HORVU6Hr1G062340.12 , HORVU6Hr1G062340.11 , HORVU6Hr1G062340.10
Wheat TraesCS6A02G242900 , TraesCS6A02G242900 , TraesCS6A02G242900 , TraesCS6D02G225200 , TraesCS6D02G225200 , TraesCS6B02G281300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
2 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
4 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
5 Sobic.001G497300 protein kinase domain containing protein, expressed -
6 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
7 Sobic.009G104201 - -
8 Sobic.003G087400 - -
9 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
10 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
11 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
12 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
13 Sobic.007G118600 mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
14 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
15 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
16 Sobic.001G205200 expressed protein -
17 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
18 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
19 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
20 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2


Gene co-expression network
sample Sobic003G056100 Sobic003G056100 Sobic001G125200 Sobic001G125200 Sobic003G056100--Sobic001G125200 Sobic002G006900 Sobic002G006900 Sobic003G056100--Sobic002G006900 Sobic008G067600 Sobic008G067600 Sobic003G056100--Sobic008G067600 Sobic001G512700 Sobic001G512700 Sobic003G056100--Sobic001G512700 Sobic001G497300 Sobic001G497300 Sobic003G056100--Sobic001G497300 Sobic002G315200 Sobic002G315200 Sobic003G056100--Sobic002G315200 Sobic009G104201 Sobic009G104201 Sobic003G056100--Sobic009G104201 Sobic003G087400 Sobic003G087400 Sobic003G056100--Sobic003G087400 Sobic007G217000 Sobic007G217000 Sobic003G056100--Sobic007G217000 Sobic001G474600 Sobic001G474600 Sobic001G125200--Sobic001G474600 Sobic001G125200--Sobic003G056100 Sobic007G207000 Sobic007G207000 Sobic001G125200--Sobic007G207000 Sobic010G069100 Sobic010G069100 Sobic001G125200--Sobic010G069100 Sobic009G026500 Sobic009G026500 Sobic001G125200--Sobic009G026500 Sobic009G166300 Sobic009G166300 Sobic001G125200--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G125200--Sobic001G409600 Sobic001G125200--Sobic002G006900 Sobic001G125200--Sobic007G217000 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic009G040600 Sobic009G040600 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G309600 Sobic002G309600 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic001G090400 Sobic001G090400 Sobic008G067600--Sobic001G090400 Sobic003G445400 Sobic003G445400 Sobic008G067600--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic008G067600--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic008G067600--Sobic001G512700 Sobic009G000500 Sobic009G000500 Sobic008G067600--Sobic009G000500 Sobic004G057400 Sobic004G057400 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800 Sobic001G512700--Sobic008G047800 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic001G512700--Sobic008G067600 Sobic007G104800 Sobic007G104800 Sobic001G497300--Sobic007G104800 Sobic001G497300--Sobic001G512700 Sobic001G497300--Sobic002G006900 Sobic006G237400 Sobic006G237400 Sobic001G497300--Sobic006G237400 Sobic004G205600 Sobic004G205600 Sobic001G497300--Sobic004G205600 Sobic001G413500 Sobic001G413500 Sobic001G497300--Sobic001G413500 Sobic001G497300--Sobic008G047800 Sobic005G023900 Sobic005G023900 Sobic001G497300--Sobic005G023900 Sobic002G157000 Sobic002G157000 Sobic001G497300--Sobic002G157000 Sobic010G153700 Sobic010G153700 Sobic002G315200--Sobic010G153700 Sobic002G315200--Sobic002G006900 Sobic001G071400 Sobic001G071400 Sobic002G315200--Sobic001G071400 Sobic002G315200--Sobic008G047800 Sobic001G220300 Sobic001G220300 Sobic002G315200--Sobic001G220300 Sobic002G315200--Sobic001G512700 Sobic009G191000 Sobic009G191000 Sobic002G315200--Sobic009G191000 Sobic001G290100 Sobic001G290100 Sobic002G315200--Sobic001G290100 Sobic002G315200--Sobic001G497300 Sobic004G007100 Sobic004G007100 Sobic009G104201--Sobic004G007100 Sobic009G104201--Sobic003G087400 Sobic008G084700 Sobic008G084700 Sobic009G104201--Sobic008G084700 Sobic009G104201--Sobic002G006900 Sobic009G104201--Sobic003G372700 Sobic007G096600 Sobic007G096600 Sobic009G104201--Sobic007G096600 Sobic002G243900 Sobic002G243900 Sobic009G104201--Sobic002G243900 Sobic007G178700 Sobic007G178700 Sobic009G104201--Sobic007G178700 Sobic003G268300 Sobic003G268300 Sobic009G104201--Sobic003G268300 Sobic003G087400--Sobic007G178700 Sobic003G087400--Sobic004G007100 Sobic003G087400--Sobic009G104201 Sobic006G048500 Sobic006G048500 Sobic003G087400--Sobic006G048500 Sobic009G127900 Sobic009G127900 Sobic003G087400--Sobic009G127900 Sobic003G087400--Sobic002G006900 Sobic003G176500 Sobic003G176500 Sobic003G087400--Sobic003G176500 Sobic010G056000 Sobic010G056000 Sobic003G087400--Sobic010G056000 Sobic001G205200 Sobic001G205200 Sobic003G087400--Sobic001G205200 Sobic001G114000 Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic007G217000--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic007G217000--Sobic007G011300 Sobic007G217000--Sobic007G118600 Sobic002G310200 Sobic002G310200 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700
Octagon: transcription factors


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