Gene annotation
Transcriptome id Sobic.001G220300.1
Synonym Sb01g019370
Functional annotation serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed
UniProt C5WYG5
Pfam PF13499
Panther DB PTHR14095 PTHR14095:SF6
NCBI CDD -
KEGG Orthology K11583; serine/threonine-protein phosphatase 2A regulatory subunit B''
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G28850 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os10g33680.1 : serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed
MaizeGDB (Corn) Zm00025a006614 , Zm00025a017639
Brachypodium KQJ97086 , PNT67539
Barley HORVU1Hr1G040980.5 , HORVU1Hr1G040980.6 , HORVU1Hr1G040980.4 , HORVU1Hr1G040980.2 , HORVU1Hr1G040980.3 , HORVU1Hr1G040980.1 , HORVU1Hr1G040980.7
Wheat TraesCS1B02G171200 , TraesCS1D02G152300 , TraesCS1A02G153900
Populus PNT06724 , PNT06723 , PNT06722


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cDNA sequences
Sobic.001G220300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
2 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
3 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
4 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
5 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
6 Sobic.009G191000 MATH domain containing protein, expressed -
7 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
8 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
9 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
10 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
11 Sobic.003G101400 transcriptional repressor, putative, expressed K11644: paired amphipathic helix protein Sin3a
12 Sobic.006G237400 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
13 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
14 Sobic.003G422500 expressed protein -
15 Sobic.010G069100 expressed protein -
16 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
17 Sobic.010G116600 FHA domain containing protein, putative, expressed -
18 Sobic.007G207000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL15 - SBP-box gene family member, expressed -
19 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
20 Sobic.003G313500 MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic001G220300 Sobic001G220300 Sobic004G146500 Sobic004G146500 Sobic001G220300--Sobic004G146500 Sobic008G047800 Sobic008G047800 Sobic001G220300--Sobic008G047800 Sobic002G315200 Sobic002G315200 Sobic001G220300--Sobic002G315200 Sobic010G101800 Sobic010G101800 Sobic001G220300--Sobic010G101800 Sobic001G109800 Sobic001G109800 Sobic001G220300--Sobic001G109800 Sobic009G191000 Sobic009G191000 Sobic001G220300--Sobic009G191000 Sobic004G065100 Sobic004G065100 Sobic001G220300--Sobic004G065100 Sobic004G274200 Sobic004G274200 Sobic001G220300--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic001G220300--Sobic002G297200 Sobic004G146500--Sobic001G109800 Sobic010G069100 Sobic010G069100 Sobic004G146500--Sobic010G069100 Sobic004G146500--Sobic002G297200 Sobic007G119200 Sobic007G119200 Sobic004G146500--Sobic007G119200 Sobic004G146500--Sobic004G274200 Sobic004G146500--Sobic001G220300 Sobic001G155000 Sobic001G155000 Sobic004G146500--Sobic001G155000 Sobic002G034600 Sobic002G034600 Sobic004G146500--Sobic002G034600 Sobic004G146500--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic010G153700 Sobic010G153700 Sobic002G315200--Sobic010G153700 Sobic002G315200--Sobic002G006900 Sobic001G071400 Sobic001G071400 Sobic002G315200--Sobic001G071400 Sobic002G315200--Sobic008G047800 Sobic002G315200--Sobic001G220300 Sobic002G315200--Sobic001G512700 Sobic002G315200--Sobic009G191000 Sobic001G290100 Sobic001G290100 Sobic002G315200--Sobic001G290100 Sobic001G497300 Sobic001G497300 Sobic002G315200--Sobic001G497300 Sobic010G101800--Sobic002G297200 Sobic010G101800--Sobic001G155000 Sobic007G167500 Sobic007G167500 Sobic010G101800--Sobic007G167500 Sobic010G028800 Sobic010G028800 Sobic010G101800--Sobic010G028800 Sobic003G397800 Sobic003G397800 Sobic010G101800--Sobic003G397800 Sobic001G409600 Sobic001G409600 Sobic010G101800--Sobic001G409600 Sobic002G310200 Sobic002G310200 Sobic010G101800--Sobic002G310200 Sobic010G053800 Sobic010G053800 Sobic010G101800--Sobic010G053800 Sobic010G101800--Sobic002G309600 Sobic001G109800--Sobic004G146500 Sobic004G264400 Sobic004G264400 Sobic001G109800--Sobic004G264400 Sobic001G109800--Sobic002G297200 Sobic001G109800--Sobic007G119200 Sobic009G166300 Sobic009G166300 Sobic001G109800--Sobic009G166300 Sobic001G109800--Sobic001G409600 Sobic002G071500 Sobic002G071500 Sobic001G109800--Sobic002G071500 Sobic001G109800--Sobic001G220300 Sobic009G026500 Sobic009G026500 Sobic001G109800--Sobic009G026500 Sobic002G008900 Sobic002G008900 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic001G241200 Sobic001G241200 Sobic004G065100--Sobic001G241200 Sobic004G065100--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G065100--Sobic007G117400 Sobic003G119000 Sobic003G119000 Sobic004G065100--Sobic003G119000 Sobic005G027400 Sobic005G027400 Sobic004G065100--Sobic005G027400 Sobic001G154900 Sobic001G154900 Sobic004G065100--Sobic001G154900 Sobic005G008800 Sobic005G008800 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic005G112300 Sobic005G112300 Sobic004G065100--Sobic005G112300 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic002G297200--Sobic003G397800 Sobic002G297200--Sobic010G101800 Sobic002G297200--Sobic001G512700 Sobic002G297200--Sobic004G146500 Sobic002G297200--Sobic008G047800 Sobic002G297200--Sobic001G109800 Sobic002G297200--Sobic001G155000 Sobic001G205200 Sobic001G205200 Sobic002G297200--Sobic001G205200 Sobic002G297200--Sobic002G006900
Octagon: transcription factors


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