Gene annotation
Transcriptome id Sobic.004G146500.1
Synonym CID4, Sb04g019250
Functional annotation ataxin-2 related protein, putative, expressed
UniProt A0A1Z5RNJ3
Pfam PF07145 PF14438 PF06741
Panther DB PTHR12854
NCBI CDD KOG2375; Protein interacting with poly(A)-binding protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14010 : CTC-interacting domain 4
RAP-DB (Rice) LOC_Os02g27950.2 : ataxin-2 related protein, putative, expressed
MaizeGDB (Corn) Zm00025a034244 , Zm00025a020338
Brachypodium KQK20696
Barley HORVU6Hr1G003890.2 , HORVU6Hr1G003890.3 , HORVU6Hr1G003890.1 , HORVU6Hr1G003890.6 , HORVU6Hr1G003890.4 , HORVU6Hr1G003890.5
Wheat TraesCS6B02G028800 , TraesCS6D02G024600 , TraesCS6D02G024600 , TraesCS6A02G022300 , TraesCS6A02G022300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G146500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G109800 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
2 Sobic.010G069100 expressed protein -
3 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
4 Sobic.007G119200 intracellular protein transport protein USO1-related, putative, expressed -
5 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
6 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
7 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
8 Sobic.002G034600 zinc ion binding protein, putative, expressed -
9 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
10 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
11 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
12 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
13 Sobic.002G264200 RNA recognition motif containing protein, expressed -
14 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
15 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
16 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
17 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
18 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
19 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
20 Sobic.008G153000 MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic004G146500 Sobic004G146500 Sobic001G109800 Sobic001G109800 Sobic004G146500--Sobic001G109800 Sobic010G069100 Sobic010G069100 Sobic004G146500--Sobic010G069100 Sobic002G297200 Sobic002G297200 Sobic004G146500--Sobic002G297200 Sobic007G119200 Sobic007G119200 Sobic004G146500--Sobic007G119200 Sobic004G274200 Sobic004G274200 Sobic004G146500--Sobic004G274200 Sobic001G220300 Sobic001G220300 Sobic004G146500--Sobic001G220300 Sobic001G155000 Sobic001G155000 Sobic004G146500--Sobic001G155000 Sobic002G034600 Sobic002G034600 Sobic004G146500--Sobic002G034600 Sobic008G047800 Sobic008G047800 Sobic004G146500--Sobic008G047800 Sobic001G109800--Sobic004G146500 Sobic004G264400 Sobic004G264400 Sobic001G109800--Sobic004G264400 Sobic001G109800--Sobic002G297200 Sobic001G109800--Sobic007G119200 Sobic009G166300 Sobic009G166300 Sobic001G109800--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G109800--Sobic001G409600 Sobic002G071500 Sobic002G071500 Sobic001G109800--Sobic002G071500 Sobic001G109800--Sobic001G220300 Sobic009G026500 Sobic009G026500 Sobic001G109800--Sobic009G026500 Sobic010G069100--Sobic002G071500 Sobic002G264200 Sobic002G264200 Sobic010G069100--Sobic002G264200 Sobic005G112300 Sobic005G112300 Sobic010G069100--Sobic005G112300 Sobic010G069100--Sobic008G047800 Sobic008G009700 Sobic008G009700 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic010G069100--Sobic004G146500 Sobic007G065400 Sobic007G065400 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic003G397800 Sobic003G397800 Sobic002G297200--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic002G297200--Sobic010G101800 Sobic001G512700 Sobic001G512700 Sobic002G297200--Sobic001G512700 Sobic002G297200--Sobic004G146500 Sobic002G297200--Sobic008G047800 Sobic002G297200--Sobic001G109800 Sobic002G297200--Sobic001G155000 Sobic001G205200 Sobic001G205200 Sobic002G297200--Sobic001G205200 Sobic002G006900 Sobic002G006900 Sobic002G297200--Sobic002G006900 Sobic007G119200--Sobic002G034600 Sobic007G119200--Sobic004G146500 Sobic008G153000 Sobic008G153000 Sobic007G119200--Sobic008G153000 Sobic007G119200--Sobic001G109800 Sobic007G041500 Sobic007G041500 Sobic007G119200--Sobic007G041500 Sobic007G119200--Sobic010G069100 Sobic007G218000 Sobic007G218000 Sobic007G119200--Sobic007G218000 Sobic007G119200--Sobic002G264200 Sobic001G088100 Sobic001G088100 Sobic007G119200--Sobic001G088100 Sobic004G274200--Sobic008G047800 Sobic010G236400 Sobic010G236400 Sobic004G274200--Sobic010G236400 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic008G112800 Sobic008G112800 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic001G220300--Sobic004G146500 Sobic001G220300--Sobic008G047800 Sobic002G315200 Sobic002G315200 Sobic001G220300--Sobic002G315200 Sobic001G220300--Sobic010G101800 Sobic001G220300--Sobic001G109800 Sobic009G191000 Sobic009G191000 Sobic001G220300--Sobic009G191000 Sobic004G065100 Sobic004G065100 Sobic001G220300--Sobic004G065100 Sobic001G220300--Sobic004G274200 Sobic001G220300--Sobic002G297200 Sobic001G155000--Sobic008G047800 Sobic001G155000--Sobic002G006900 Sobic003G200200 Sobic003G200200 Sobic001G155000--Sobic003G200200 Sobic009G040600 Sobic009G040600 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic007G011300 Sobic007G011300 Sobic001G155000--Sobic007G011300 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic007G217000 Sobic007G217000 Sobic001G155000--Sobic007G217000 Sobic009G198100 Sobic009G198100 Sobic002G034600--Sobic009G198100 Sobic002G034600--Sobic007G119200 Sobic003G081000 Sobic003G081000 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic003G355000 Sobic003G355000 Sobic002G034600--Sobic003G355000 Sobic007G118200 Sobic007G118200 Sobic002G034600--Sobic007G118200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic002G034600--Sobic010G236400 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.