Gene annotation
Transcriptome id Sobic.006G237400.1
Synonym Sb06g030420, CNGC6, ATCNGC6
Functional annotation cyclic nucleotide-gated ion channel, putative, expressed
UniProt C5Y901
Pfam PF00027 PF00520
Panther DB PTHR10217 PTHR10217:SF543
NCBI CDD -
KEGG Orthology K05391; cyclic nucleotide gated channel, plant
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT2G23980 : cyclic nucleotide-gated channel 6
RAP-DB (Rice) LOC_Os04g55080.1 : cyclic nucleotide-gated ion channel, putative, expressed
MaizeGDB (Corn) Zm00025a009573
Brachypodium KQJ84916
Barley HORVU2Hr1G114940.9 , HORVU2Hr1G114940.8 , HORVU2Hr1G114940.15 , HORVU2Hr1G114940.14 , HORVU2Hr1G114940.13 , HORVU2Hr1G114940.12 , HORVU2Hr1G114940.11 , HORVU2Hr1G114940.10 , HORVU2Hr1G114940.7 , HORVU2Hr1G114940.6 , HORVU2Hr1G114940.5 , HORVU2Hr1G114940.4 , HORVU2Hr1G114940.3 , HORVU2Hr1G114940.2 , HORVU2Hr1G114940.1
Wheat TraesCS2D02G520900 , TraesCS2A02G519600 , TraesCS2B02G547600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G497300 protein kinase domain containing protein, expressed -
2 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
3 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
4 Sobic.009G249200 transmembrane protein, putative, expressed -
5 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
6 Sobic.001G253700 protein kinase domain containing protein, expressed K04733: interleukin-1 receptor-associated kinase 4
7 Sobic.002G310200 expressed protein -
8 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
9 Sobic.001G220300 serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
10 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
11 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
12 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
13 Sobic.007G096000 expressed protein -
14 Sobic.K042000 non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase
15 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
16 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
18 Sobic.001G000200 TBC domain containing protein, expressed -
19 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
20 Sobic.002G340100 GTPase-activating protein, putative, expressed K12486: stromal membrane-associated protein


Gene co-expression network
sample Sobic006G237400 Sobic006G237400 Sobic001G497300 Sobic001G497300 Sobic006G237400--Sobic001G497300 Sobic008G047800 Sobic008G047800 Sobic006G237400--Sobic008G047800 Sobic003G029700 Sobic003G029700 Sobic006G237400--Sobic003G029700 Sobic009G249200 Sobic009G249200 Sobic006G237400--Sobic009G249200 Sobic007G217000 Sobic007G217000 Sobic006G237400--Sobic007G217000 Sobic001G253700 Sobic001G253700 Sobic006G237400--Sobic001G253700 Sobic002G310200 Sobic002G310200 Sobic006G237400--Sobic002G310200 Sobic001G474600 Sobic001G474600 Sobic006G237400--Sobic001G474600 Sobic001G220300 Sobic001G220300 Sobic006G237400--Sobic001G220300 Sobic007G104800 Sobic007G104800 Sobic001G497300--Sobic007G104800 Sobic001G512700 Sobic001G512700 Sobic001G497300--Sobic001G512700 Sobic002G006900 Sobic002G006900 Sobic001G497300--Sobic002G006900 Sobic001G497300--Sobic006G237400 Sobic004G205600 Sobic004G205600 Sobic001G497300--Sobic004G205600 Sobic001G413500 Sobic001G413500 Sobic001G497300--Sobic001G413500 Sobic001G497300--Sobic008G047800 Sobic005G023900 Sobic005G023900 Sobic001G497300--Sobic005G023900 Sobic002G157000 Sobic002G157000 Sobic001G497300--Sobic002G157000 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic001G214300 Sobic001G214300 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic003G029700--Sobic008G047800 Sobic003G029700--Sobic001G497300 Sobic003G029700--Sobic002G006900 Sobic009G026500 Sobic009G026500 Sobic003G029700--Sobic009G026500 Sobic009G191000 Sobic009G191000 Sobic003G029700--Sobic009G191000 Sobic001G205200 Sobic001G205200 Sobic003G029700--Sobic001G205200 Sobic007G024700 Sobic007G024700 Sobic009G249200--Sobic007G024700 Sobic001G409600 Sobic001G409600 Sobic009G249200--Sobic001G409600 Sobic009G249200--Sobic006G237400 Sobic009G166300 Sobic009G166300 Sobic009G249200--Sobic009G166300 Sobic004G021100 Sobic004G021100 Sobic009G249200--Sobic004G021100 Sobic010G205800 Sobic010G205800 Sobic009G249200--Sobic010G205800 Sobic003G408500 Sobic003G408500 Sobic009G249200--Sobic003G408500 Sobic002G315200 Sobic002G315200 Sobic009G249200--Sobic002G315200 Sobic009G027300 Sobic009G027300 Sobic009G249200--Sobic009G027300 Sobic001G114000 Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic007G217000--Sobic009G166300 Sobic007G217000--Sobic001G155000 Sobic007G217000--Sobic001G474600 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic001G253700--Sobic006G237400 Sobic001G000200 Sobic001G000200 Sobic001G253700--Sobic001G000200 Sobic006G273200 Sobic006G273200 Sobic001G253700--Sobic006G273200 Sobic003G176600 Sobic003G176600 Sobic001G253700--Sobic003G176600 Sobic003G001000 Sobic003G001000 Sobic001G253700--Sobic003G001000 Sobic004G119100 Sobic004G119100 Sobic001G253700--Sobic004G119100 Sobic001G253700--Sobic009G249200 Sobic002G187801 Sobic002G187801 Sobic001G253700--Sobic002G187801 Sobic007G190333 Sobic007G190333 Sobic001G253700--Sobic007G190333 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic002G310200--Sobic007G217000 Sobic002G310200--Sobic004G084300 Sobic007G096000 Sobic007G096000 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic008G067600 Sobic008G067600 Sobic002G310200--Sobic008G067600 Sobic002G310200--Sobic004G067700 Sobic003G280800 Sobic003G280800 Sobic001G474600--Sobic003G280800 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic003G372700 Sobic003G372700 Sobic001G474600--Sobic003G372700 Sobic001G474600--Sobic007G217000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200 Sobic004G146500 Sobic004G146500 Sobic001G220300--Sobic004G146500 Sobic001G220300--Sobic008G047800 Sobic001G220300--Sobic002G315200 Sobic001G220300--Sobic010G101800 Sobic001G109800 Sobic001G109800 Sobic001G220300--Sobic001G109800 Sobic001G220300--Sobic009G191000 Sobic004G065100 Sobic004G065100 Sobic001G220300--Sobic004G065100 Sobic001G220300--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic001G220300--Sobic002G297200
Octagon: transcription factors


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