Gene annotation
Transcriptome id Sobic.003G389200.1
Synonym Sb03g042710, SYN4, ATRAD21.3
Functional annotation Rad21 / Rec8 like protein, putative, expressed
UniProt C5XFD5
Pfam PF04824 PF04825
Panther DB PTHR12585 PTHR12585:SF29
NCBI CDD KOG1213; Sister chromatid cohesion complex Cohesin, subunit RAD21/SCC1
KEGG Orthology K06670; SCC1, MCD1, cohesin complex subunit SCC1
Gene Ontology GO:0000228; nuclear chromosome GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G16270 : sister chromatid cohesion 1 protein 4
RAP-DB (Rice) LOC_Os01g67250.1 : Rad21 / Rec8 like protein, putative, expressed
MaizeGDB (Corn) Zm00025a039448 , Zm00025a026422
Brachypodium KQK11021
Barley HORVU3Hr1G089480.18 , HORVU3Hr1G089480.19 , HORVU3Hr1G089480.14 , HORVU3Hr1G089480.15 , HORVU3Hr1G089480.16 , HORVU3Hr1G089480.17 , HORVU3Hr1G089480.10 , HORVU3Hr1G089480.11 , HORVU3Hr1G089480.12 , HORVU3Hr1G089480.13 , HORVU3Hr1G089480.6 , HORVU3Hr1G089480.7 , HORVU3Hr1G089480.4 , HORVU3Hr1G089480.5 , HORVU3Hr1G089480.2 , HORVU3Hr1G089480.3 , HORVU3Hr1G089480.1 , HORVU3Hr1G089480.8 , HORVU3Hr1G089480.9
Wheat TraesCS3A02G397800 , TraesCS3A02G397800 , TraesCS3B02G429700 , TraesCS3B02G429700 , TraesCS3B02G429700 , TraesCS3D02G391700 , TraesCS3D02G391700 , TraesCS3D02G391700 , TraesCS2A02G311300
Populus -


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cDNA sequences
Sobic.003G389200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G256300 DNA binding protein, putative, expressed -
2 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
3 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
4 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
5 Sobic.010G010700 PHD-finger family protein, expressed -
6 Sobic.001G365900 PWWP domain containing protein, expressed -
7 Sobic.001G540400 expressed protein -
8 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
9 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
10 Sobic.010G123600 WW domain containing protein, expressed -
11 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
12 Sobic.003G388100 expressed protein -
13 Sobic.001G025000 FACT complex subunit SPT16, putative, expressed -
14 Sobic.008G044100 expressed protein -
15 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
16 Sobic.007G062800 SET domain containing protein, expressed -
17 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
18 Sobic.007G117400 expressed protein -
19 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
20 Sobic.001G289600 BAH domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G389200 Sobic003G389200 Sobic009G256300 Sobic009G256300 Sobic003G389200--Sobic009G256300 Sobic010G206900 Sobic010G206900 Sobic003G389200--Sobic010G206900 Sobic003G360400 Sobic003G360400 Sobic003G389200--Sobic003G360400 Sobic010G112100 Sobic010G112100 Sobic003G389200--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic003G389200--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic003G389200--Sobic001G365900 Sobic001G540400 Sobic001G540400 Sobic003G389200--Sobic001G540400 Sobic007G105100 Sobic007G105100 Sobic003G389200--Sobic007G105100 Sobic001G230000 Sobic001G230000 Sobic003G389200--Sobic001G230000 Sobic009G256300--Sobic010G112100 Sobic009G256300--Sobic003G389200 Sobic004G242400 Sobic004G242400 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic009G256300--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic009G256300--Sobic009G109200 Sobic004G276400 Sobic004G276400 Sobic009G256300--Sobic004G276400 Sobic001G542400 Sobic001G542400 Sobic009G256300--Sobic001G542400 Sobic010G206900--Sobic010G010700 Sobic010G206900--Sobic001G365900 Sobic004G034900 Sobic004G034900 Sobic010G206900--Sobic004G034900 Sobic001G534700 Sobic001G534700 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic002G411600 Sobic002G411600 Sobic010G206900--Sobic002G411600 Sobic008G001200 Sobic008G001200 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic001G365900--Sobic010G206900 Sobic001G365900--Sobic001G534700 Sobic001G289600 Sobic001G289600 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic001G365900--Sobic002G411600 Sobic001G365900--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic001G365900--Sobic009G191000 Sobic001G365900--Sobic004G034900 Sobic001G365900--Sobic001G540400 Sobic001G540400--Sobic001G289600 Sobic001G540400--Sobic003G408600 Sobic001G540400--Sobic007G062800 Sobic005G008800 Sobic005G008800 Sobic001G540400--Sobic005G008800 Sobic001G540400--Sobic004G034900 Sobic001G540400--Sobic005G112300 Sobic003G422500 Sobic003G422500 Sobic001G540400--Sobic003G422500 Sobic002G397500 Sobic002G397500 Sobic001G540400--Sobic002G397500 Sobic001G540400--Sobic010G112100 Sobic007G105100--Sobic005G112300 Sobic007G105100--Sobic001G289600 Sobic007G105100--Sobic003G408600 Sobic007G105100--Sobic010G010700 Sobic007G105100--Sobic007G062800 Sobic007G105100--Sobic005G008800 Sobic007G105100--Sobic001G540400 Sobic007G105100--Sobic003G360400 Sobic007G105100--Sobic010G112100 Sobic001G230000--Sobic010G206900 Sobic003G155100 Sobic003G155100 Sobic001G230000--Sobic003G155100 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic004G223000 Sobic004G223000 Sobic001G230000--Sobic004G223000 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100
Octagon: transcription factors


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