Gene annotation
Transcriptome id Sobic.001G025000.1,Sobic.001G025000.2
Synonym SPT16, Sb01g002390
Functional annotation FACT complex subunit SPT16, putative, expressed
UniProt C5WU06 , A0A1B6QH03
Pfam PF08512 PF00557 PF14826 PF08644
Panther DB PTHR13980
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G10710 : global transcription factor C
RAP-DB (Rice) LOC_Os04g25550.1 : FACT complex subunit SPT16, putative, expressed
MaizeGDB (Corn) Zm00025a018715
Brachypodium KQK21282 , KQK21283 , KQK21280
Barley HORVU2Hr1G010380.10 , HORVU2Hr1G010380.11 , HORVU2Hr1G010380.2 , HORVU2Hr1G010380.3 , HORVU2Hr1G010380.1 , HORVU2Hr1G010380.6 , HORVU2Hr1G010380.7 , HORVU2Hr1G010380.4 , HORVU2Hr1G010380.5 , HORVU2Hr1G010380.8 , HORVU2Hr1G010380.9
Wheat TraesCS2A02G017400
Populus -


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cDNA sequences
Sobic.001G025000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
2 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
3 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
4 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
5 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
6 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
7 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
8 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
9 Sobic.001G063700 expressed protein -
10 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
11 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
12 Sobic.006G118700 MYB family transcription factor, putative, expressed -
13 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
14 Sobic.002G154000 EDM2, putative, expressed -
15 Sobic.010G069100 expressed protein -
16 Sobic.001G196500 plus-3 domain containing protein, putative, expressed -
17 Sobic.001G398800 FHA domain containing protein, putative, expressed -
18 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
19 Sobic.007G183900 ubiquitin family protein, putative, expressed -
20 Sobic.005G200800 homeobox domain containing protein, expressed -


Gene co-expression network
sample Sobic001G025000 Sobic001G025000 Sobic003G360400 Sobic003G360400 Sobic001G025000--Sobic003G360400 Sobic009G044800 Sobic009G044800 Sobic001G025000--Sobic009G044800 Sobic003G389200 Sobic003G389200 Sobic001G025000--Sobic003G389200 Sobic003G408600 Sobic003G408600 Sobic001G025000--Sobic003G408600 Sobic001G354600 Sobic001G354600 Sobic001G025000--Sobic001G354600 Sobic010G112100 Sobic010G112100 Sobic001G025000--Sobic010G112100 Sobic002G045600 Sobic002G045600 Sobic001G025000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G025000--Sobic007G105100 Sobic001G063700 Sobic001G063700 Sobic001G025000--Sobic001G063700 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic003G389200--Sobic009G256300 Sobic010G206900 Sobic010G206900 Sobic003G389200--Sobic010G206900 Sobic003G389200--Sobic003G360400 Sobic003G389200--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic003G389200--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic003G389200--Sobic001G365900 Sobic001G540400 Sobic001G540400 Sobic003G389200--Sobic001G540400 Sobic003G389200--Sobic007G105100 Sobic001G230000 Sobic001G230000 Sobic003G389200--Sobic001G230000 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic001G354600--Sobic003G360400 Sobic001G354600--Sobic010G112100 Sobic001G354600--Sobic001G433800 Sobic004G048800 Sobic004G048800 Sobic001G354600--Sobic004G048800 Sobic001G354600--Sobic007G105100 Sobic002G133300 Sobic002G133300 Sobic001G354600--Sobic002G133300 Sobic001G354600--Sobic001G063700 Sobic002G068100 Sobic002G068100 Sobic001G354600--Sobic002G068100 Sobic001G354600--Sobic009G044800 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic002G045600--Sobic007G163100 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500 Sobic007G105100--Sobic005G112300 Sobic001G289600 Sobic001G289600 Sobic007G105100--Sobic001G289600 Sobic007G105100--Sobic003G408600 Sobic007G105100--Sobic010G010700 Sobic007G105100--Sobic007G062800 Sobic007G105100--Sobic005G008800 Sobic007G105100--Sobic001G540400 Sobic007G105100--Sobic003G360400 Sobic007G105100--Sobic010G112100 Sobic001G461400 Sobic001G461400 Sobic001G063700--Sobic001G461400 Sobic001G063700--Sobic003G360400 Sobic001G063700--Sobic010G112100 Sobic001G063700--Sobic002G154000 Sobic003G188400 Sobic003G188400 Sobic001G063700--Sobic003G188400 Sobic001G063700--Sobic001G433800 Sobic001G063700--Sobic009G256300 Sobic008G002500 Sobic008G002500 Sobic001G063700--Sobic008G002500 Sobic001G063700--Sobic001G354600
Octagon: transcription factors


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