Gene annotation
Transcriptome id Sobic.006G183800.1
Synonym Sb06g025810
Functional annotation KH domain containing protein, putative, expressed
UniProt C5YE34
Pfam PF00013 PF00076 PF16275
Panther DB PTHR11208 PTHR11208:SF45
NCBI CDD KOG1588; RNA-binding protein Sam68 and related KH domain proteins
KEGG Orthology K13095; splicing factor 1
Gene Ontology GO:0003723; RNA binding GO:0003676nucleic acid binding GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT5G51300 : splicing factor-related
RAP-DB (Rice) LOC_Os04g31620.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a011789 , Zm00025a055880
Brachypodium KQJ82259 , KQJ82258 , PNT60909
Barley HORVU2Hr1G069470.1 , HORVU2Hr1G069470.2 , HORVU2Hr1G069470.3 , HORVU2Hr1G069490.2 , HORVU2Hr1G069490.1
Wheat -
Populus -


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cDNA sequences
Sobic.006G183800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G094000 expressed protein -
2 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
3 Sobic.009G178800 bZIP transcription factor, putative, expressed K14432: ABA responsive element binding factor
4 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
6 Sobic.003G084900 expressed protein -
7 Sobic.008G078100 EDM2, putative, expressed -
8 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
9 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
10 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
11 Sobic.010G056000 GAGA-binding protein, putative, expressed -
12 Sobic.002G248400 ENT domain containing protein, expressed -
13 Sobic.003G268300 surp module family protein, putative, expressed -
14 Sobic.010G189000 protein with a conserved N-terminal region, putative, expressed -
15 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
16 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
17 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
18 Sobic.006G080300 SET domain containing protein, expressed -
19 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
20 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -


Gene co-expression network
sample Sobic006G183800 Sobic006G183800 Sobic001G094000 Sobic001G094000 Sobic006G183800--Sobic001G094000 Sobic003G187400 Sobic003G187400 Sobic006G183800--Sobic003G187400 Sobic009G178800 Sobic009G178800 Sobic006G183800--Sobic009G178800 Sobic008G054500 Sobic008G054500 Sobic006G183800--Sobic008G054500 Sobic009G040700 Sobic009G040700 Sobic006G183800--Sobic009G040700 Sobic003G084900 Sobic003G084900 Sobic006G183800--Sobic003G084900 Sobic008G078100 Sobic008G078100 Sobic006G183800--Sobic008G078100 Sobic001G409600 Sobic001G409600 Sobic006G183800--Sobic001G409600 Sobic002G157000 Sobic002G157000 Sobic006G183800--Sobic002G157000 Sobic007G011400 Sobic007G011400 Sobic001G094000--Sobic007G011400 Sobic001G094000--Sobic009G040700 Sobic001G477800 Sobic001G477800 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic003G187400--Sobic002G157300 Sobic005G149500 Sobic005G149500 Sobic003G187400--Sobic005G149500 Sobic003G187400--Sobic009G040700 Sobic003G187400--Sobic001G094000 Sobic006G173100 Sobic006G173100 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800 Sobic002G248400 Sobic002G248400 Sobic009G178800--Sobic002G248400 Sobic009G178800--Sobic008G054500 Sobic009G178800--Sobic002G157000 Sobic009G178800--Sobic006G183800 Sobic006G032400 Sobic006G032400 Sobic009G178800--Sobic006G032400 Sobic002G320500 Sobic002G320500 Sobic009G178800--Sobic002G320500 Sobic001G420200 Sobic001G420200 Sobic009G178800--Sobic001G420200 Sobic002G144933 Sobic002G144933 Sobic009G178800--Sobic002G144933 Sobic009G178800--Sobic003G084900 Sobic008G173900 Sobic008G173900 Sobic008G054500--Sobic008G173900 Sobic003G200200 Sobic003G200200 Sobic008G054500--Sobic003G200200 Sobic008G054500--Sobic003G268300 Sobic008G054500--Sobic002G248400 Sobic008G054500--Sobic008G078100 Sobic008G054500--Sobic002G157000 Sobic003G445400 Sobic003G445400 Sobic008G054500--Sobic003G445400 Sobic007G185900 Sobic007G185900 Sobic008G054500--Sobic007G185900 Sobic003G397800 Sobic003G397800 Sobic008G054500--Sobic003G397800 Sobic009G040700--Sobic001G094000 Sobic009G040700--Sobic003G187400 Sobic009G040700--Sobic005G149500 Sobic009G040700--Sobic007G011400 Sobic009G040700--Sobic002G157300 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic009G040700--Sobic004G196700 Sobic009G040700--Sobic008G078100 Sobic010G056000 Sobic010G056000 Sobic003G084900--Sobic010G056000 Sobic007G096000 Sobic007G096000 Sobic003G084900--Sobic007G096000 Sobic010G028800 Sobic010G028800 Sobic003G084900--Sobic010G028800 Sobic003G084900--Sobic008G173900 Sobic003G084900--Sobic008G054500 Sobic006G165000 Sobic006G165000 Sobic003G084900--Sobic006G165000 Sobic003G084900--Sobic002G144933 Sobic001G111900 Sobic001G111900 Sobic003G084900--Sobic001G111900 Sobic003G084900--Sobic003G268300 Sobic008G078100--Sobic001G094000 Sobic008G078100--Sobic008G054500 Sobic008G078100--Sobic009G040700 Sobic008G078100--Sobic001G477800 Sobic008G078100--Sobic003G187400 Sobic001G544200 Sobic001G544200 Sobic008G078100--Sobic001G544200 Sobic008G078100--Sobic007G185900 Sobic003G422300 Sobic003G422300 Sobic008G078100--Sobic003G422300 Sobic008G078100--Sobic004G196700 Sobic001G409600--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic001G409600--Sobic010G101800 Sobic002G297200 Sobic002G297200 Sobic001G409600--Sobic002G297200 Sobic001G109800 Sobic001G109800 Sobic001G409600--Sobic001G109800 Sobic001G125200 Sobic001G125200 Sobic001G409600--Sobic001G125200 Sobic001G409600--Sobic007G096000 Sobic009G249200 Sobic009G249200 Sobic001G409600--Sobic009G249200 Sobic001G409600--Sobic003G187400 Sobic001G016000 Sobic001G016000 Sobic001G409600--Sobic001G016000 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000
Octagon: transcription factors


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