Gene annotation
Transcriptome id Sobic.008G063000.1
Synonym SEU, Sb08g005250
Functional annotation transcriptional corepressor SEUSS, putative, expressed
UniProt A0A1B6PBK6
Pfam PF01803
Panther DB PTHR10378 PTHR10378:SF10
NCBI CDD KOG2181; LIM domain binding protein LDB1/NLI/CLIM
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003712transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT5G62090 : SEUSS-like 2
RAP-DB (Rice) LOC_Os11g10060.1 : transcriptional corepressor SEUSS, putative, expressed
MaizeGDB (Corn) Zm00025a015607 , Zm00025a054168 , Zm00025a025673 , Zm00025a029578
Brachypodium KQK06560 , PNT63961 , KQJ89012 , KQJ89011
Barley HORVU4Hr1G017160.6 , HORVU4Hr1G017140.11 , HORVU4Hr1G017140.10 , HORVU4Hr1G017140.3 , HORVU4Hr1G017140.2 , HORVU4Hr1G017140.6 , HORVU4Hr1G017140.5 , HORVU4Hr1G017140.4 , HORVU4Hr1G017140.9 , HORVU4Hr1G017140.8 , HORVU4Hr1G017160.11 , HORVU4Hr1G017160.10 , HORVU4Hr1G017160.9 , HORVU4Hr1G017160.8 , HORVU4Hr1G017160.3 , HORVU4Hr1G017160.5 , HORVU4Hr1G017160.4
Wheat TraesCS4A02G211800 , TraesCS4A02G211800 , TraesCS4A02G211800 , TraesCS4A02G211700 , TraesCS4A02G211700 , TraesCS4D02G101500 , TraesCS4D02G101500 , TraesCS4D02G101700 , TraesCS4D02G101700 , TraesCS4D02G101700 , TraesCS4D02G101500 , TraesCS4B02G104400 , TraesCS4B02G104400 , TraesCS4A02G211700 , TraesCS4B02G104300 , TraesCS4B02G104300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G094000 expressed protein -
2 Sobic.003G268300 surp module family protein, putative, expressed -
3 Sobic.006G246900 expressed protein -
4 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
5 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
6 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
7 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
8 Sobic.002G144933 - -
9 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
10 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
11 Sobic.009G127900 - -
12 Sobic.003G170100 - -
13 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
14 Sobic.005G023900 expressed protein -
15 Sobic.010G277500 expressed protein -
16 Sobic.002G248400 ENT domain containing protein, expressed -
17 Sobic.010G056000 GAGA-binding protein, putative, expressed -
18 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
19 Sobic.001G420200 RNA recognition motif containing protein, putative, expressed K11093: U1 small nuclear ribonucleoprotein 70kDa
20 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B


Gene co-expression network
sample Sobic008G063000 Sobic008G063000 Sobic001G094000 Sobic001G094000 Sobic008G063000--Sobic001G094000 Sobic003G268300 Sobic003G268300 Sobic008G063000--Sobic003G268300 Sobic006G246900 Sobic006G246900 Sobic008G063000--Sobic006G246900 Sobic002G157000 Sobic002G157000 Sobic008G063000--Sobic002G157000 Sobic003G200200 Sobic003G200200 Sobic008G063000--Sobic003G200200 Sobic008G173900 Sobic008G173900 Sobic008G063000--Sobic008G173900 Sobic002G006900 Sobic002G006900 Sobic008G063000--Sobic002G006900 Sobic002G144933 Sobic002G144933 Sobic008G063000--Sobic002G144933 Sobic004G145500 Sobic004G145500 Sobic008G063000--Sobic004G145500 Sobic007G011400 Sobic007G011400 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G477800 Sobic001G477800 Sobic001G094000--Sobic001G477800 Sobic001G094000--Sobic002G157000 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic007G096600 Sobic007G096600 Sobic003G268300--Sobic007G096600 Sobic003G268300--Sobic002G157000 Sobic001G420200 Sobic001G420200 Sobic003G268300--Sobic001G420200 Sobic003G268300--Sobic003G200200 Sobic002G248400 Sobic002G248400 Sobic003G268300--Sobic002G248400 Sobic009G127900 Sobic009G127900 Sobic003G268300--Sobic009G127900 Sobic007G178700 Sobic007G178700 Sobic003G268300--Sobic007G178700 Sobic007G037900 Sobic007G037900 Sobic003G268300--Sobic007G037900 Sobic003G268300--Sobic008G173900 Sobic001G162300 Sobic001G162300 Sobic006G246900--Sobic001G162300 Sobic006G246900--Sobic003G268300 Sobic006G246900--Sobic007G037900 Sobic006G246900--Sobic001G094000 Sobic006G246900--Sobic002G157000 Sobic009G134500 Sobic009G134500 Sobic006G246900--Sobic009G134500 Sobic006G246900--Sobic008G063000 Sobic006G246900--Sobic001G477800 Sobic006G246900--Sobic007G011400 Sobic002G157000--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic001G155000 Sobic001G155000 Sobic003G200200--Sobic001G155000 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic008G173900--Sobic002G157000 Sobic008G173900--Sobic002G144933 Sobic008G173900--Sobic001G420200 Sobic008G173900--Sobic003G268300 Sobic008G054500 Sobic008G054500 Sobic008G173900--Sobic008G054500 Sobic008G173900--Sobic003G200200 Sobic001G274200 Sobic001G274200 Sobic008G173900--Sobic001G274200 Sobic001G413500 Sobic001G413500 Sobic008G173900--Sobic001G413500 Sobic008G173900--Sobic007G096600 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic009G040600 Sobic009G040600 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G309600 Sobic002G309600 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic002G144933--Sobic001G420200 Sobic002G144933--Sobic003G268300 Sobic002G144933--Sobic001G274200 Sobic002G144933--Sobic007G037900 Sobic002G144933--Sobic004G145500 Sobic002G144933--Sobic003G170100 Sobic009G065100 Sobic009G065100 Sobic002G144933--Sobic009G065100 Sobic004G145500--Sobic007G065400 Sobic004G145500--Sobic008G173900 Sobic004G145500--Sobic002G144933 Sobic008G009700 Sobic008G009700 Sobic004G145500--Sobic008G009700 Sobic001G306900 Sobic001G306900 Sobic004G145500--Sobic001G306900 Sobic004G145500--Sobic003G200200 Sobic009G210500 Sobic009G210500 Sobic004G145500--Sobic009G210500 Sobic010G136600 Sobic010G136600 Sobic004G145500--Sobic010G136600 Sobic001G241200 Sobic001G241200 Sobic004G145500--Sobic001G241200
Octagon: transcription factors


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