Gene annotation
Transcriptome id Sobic.007G026300.1
Synonym Sb07g002300, SMP1
Functional annotation pre-mRNA-splicing factor SLU7, putative, expressed
UniProt C5YMK6
Pfam PF11708
Panther DB PTHR12942 PTHR12942:SF2
NCBI CDD -
KEGG Orthology K12819; pre-mRNA-processing factor SLU7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65660 : Pre-mRNA splicing Prp18-interacting factor
RAP-DB (Rice) LOC_Os08g03390.1 : pre-mRNA-splicing factor SLU7, putative, expressed
MaizeGDB (Corn) Zm00025a040354 , Zm00025a030205
Brachypodium PNT66572
Barley HORVU7Hr1G074590.1
Wheat TraesCS7A02G312400 , TraesCS7B02G212100 , TraesCS7D02G308800
Populus PNT09786 , PNT09787 , PNT09785 , PNT00437 , PNT09788 , PNT00438 , PNT00439 , PNT00436


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
2 Sobic.004G205600 bromodomain domain containing protein, expressed -
3 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
4 Sobic.007G104800 expressed protein -
5 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
6 Sobic.001G497300 protein kinase domain containing protein, expressed -
7 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
8 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
9 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
10 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
11 Sobic.001G119300 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
12 Sobic.002G248400 ENT domain containing protein, expressed -
13 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
15 Sobic.002G350300 gamma response I protein, putative, expressed K13096: splicing factor 4
16 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
17 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
18 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
19 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
20 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31


Gene co-expression network
sample Sobic007G026300 Sobic007G026300 Sobic004G021100 Sobic004G021100 Sobic007G026300--Sobic004G021100 Sobic004G205600 Sobic004G205600 Sobic007G026300--Sobic004G205600 Sobic001G512700 Sobic001G512700 Sobic007G026300--Sobic001G512700 Sobic007G104800 Sobic007G104800 Sobic007G026300--Sobic007G104800 Sobic004G257400 Sobic004G257400 Sobic007G026300--Sobic004G257400 Sobic001G497300 Sobic001G497300 Sobic007G026300--Sobic001G497300 Sobic007G200600 Sobic007G200600 Sobic007G026300--Sobic007G200600 Sobic001G090400 Sobic001G090400 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic009G056800 Sobic009G056800 Sobic004G021100--Sobic009G056800 Sobic004G021100--Sobic007G026300 Sobic004G021100--Sobic001G512700 Sobic006G173100 Sobic006G173100 Sobic004G021100--Sobic006G173100 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic003G187400 Sobic003G187400 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic004G205600--Sobic004G057400 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic008G047800 Sobic008G047800 Sobic001G512700--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G512700--Sobic001G497300 Sobic001G512700--Sobic007G118600 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic007G104800--Sobic001G497300 Sobic007G104800--Sobic004G021100 Sobic001G119300 Sobic001G119300 Sobic007G104800--Sobic001G119300 Sobic007G104800--Sobic003G187400 Sobic007G104800--Sobic007G200600 Sobic007G104800--Sobic001G512700 Sobic007G104800--Sobic004G205600 Sobic007G104800--Sobic007G026300 Sobic001G107500 Sobic001G107500 Sobic007G104800--Sobic001G107500 Sobic002G248400 Sobic002G248400 Sobic004G257400--Sobic002G248400 Sobic003G108700 Sobic003G108700 Sobic004G257400--Sobic003G108700 Sobic008G054500 Sobic008G054500 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic004G257400--Sobic007G026300 Sobic003G073000 Sobic003G073000 Sobic004G257400--Sobic003G073000 Sobic004G257400--Sobic001G090400 Sobic007G167500 Sobic007G167500 Sobic004G257400--Sobic007G167500 Sobic001G251700 Sobic001G251700 Sobic004G257400--Sobic001G251700 Sobic001G497300--Sobic007G104800 Sobic001G497300--Sobic001G512700 Sobic001G497300--Sobic002G006900 Sobic006G237400 Sobic006G237400 Sobic001G497300--Sobic006G237400 Sobic001G497300--Sobic004G205600 Sobic001G413500 Sobic001G413500 Sobic001G497300--Sobic001G413500 Sobic001G497300--Sobic008G047800 Sobic005G023900 Sobic005G023900 Sobic001G497300--Sobic005G023900 Sobic001G497300--Sobic002G157000 Sobic007G200600--Sobic007G104800 Sobic007G200600--Sobic001G119300 Sobic007G200600--Sobic001G497300 Sobic007G200600--Sobic007G026300 Sobic007G200600--Sobic003G187400 Sobic007G200600--Sobic004G021100 Sobic007G200600--Sobic001G512700 Sobic007G132400 Sobic007G132400 Sobic007G200600--Sobic007G132400 Sobic004G084300 Sobic004G084300 Sobic007G200600--Sobic004G084300 Sobic001G090400--Sobic008G067600 Sobic001G090400--Sobic006G173100 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic001G090400--Sobic002G320500 Sobic001G090400--Sobic009G000500 Sobic001G090400--Sobic002G157300 Sobic001G090400--Sobic004G205600 Sobic001G090400--Sobic002G248400 Sobic004G057400--Sobic001G090400 Sobic004G057400--Sobic004G205600 Sobic004G057400--Sobic002G157300 Sobic004G057400--Sobic009G000500 Sobic004G057400--Sobic008G067600 Sobic006G128900 Sobic006G128900 Sobic004G057400--Sobic006G128900 Sobic007G011400 Sobic007G011400 Sobic004G057400--Sobic007G011400 Sobic004G031700 Sobic004G031700 Sobic004G057400--Sobic004G031700 Sobic007G205800 Sobic007G205800 Sobic004G057400--Sobic007G205800
Octagon: transcription factors


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