Gene annotation
Transcriptome id Sobic.005G106500.5,Sobic.005G106500.2,Sobic.005G106500.1,Sobic.005G106500.4,Sobic.005G106500.3
Synonym Sb05g009990
Functional annotation oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
UniProt A0A1B6PRH9 , A0A1Z5RI67 , A0A1B6PRH7 , A0A1Z5RHT6 , A0A1B6PRK1
Pfam PF13561 PF08659
Panther DB PTHR24322 PTHR24322:SF631
NCBI CDD KOG1207; Diacetyl reductase/L-xylulose reductase KOG416915-hydroxyprostaglandin dehydrogenase and related dehydrogenases KOG1205Predicted dehydrogenase
KEGG Orthology K11165; dehydrogenase/reductase SDR family member 7
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G03330 : NAD(P)-binding Rossmann-fold superfamily protein
RAP-DB (Rice) LOC_Os11g16410.1,LOC_Os11g16410.5 : oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed
MaizeGDB (Corn) Zm00025a012588
Brachypodium KQJ88701 , KQJ88700
Barley HORVU4Hr1G014360.6 , HORVU4Hr1G014360.4 , HORVU4Hr1G014360.5 , HORVU4Hr1G014360.2 , HORVU4Hr1G014360.3 , HORVU4Hr1G014360.1 , HORVU4Hr1G014360.8 , HORVU4Hr1G014360.9 , HORVU4Hr1G014360.7 , HORVU4Hr1G014360.14 , HORVU4Hr1G014360.15 , HORVU4Hr1G014360.10 , HORVU4Hr1G014360.11 , HORVU4Hr1G014360.12 , HORVU4Hr1G014360.13
Wheat TraesCS4A02G232000 , TraesCS4D02G081900 , TraesCS4B02G084000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G106500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
2 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
3 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
4 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
5 Sobic.007G203200 RNA recognition motif containing protein, putative, expressed K13201: TIA1, nucleolysin TIA-1/TIAR
6 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
7 Sobic.009G024400 ZOS5-03 - C2H2 zinc finger protein, expressed K09191: general transcription factor IIIA
8 Sobic.003G266001 - -
9 Sobic.006G194400 cyclin-T1-4, putative, expressed K15188: cyclin T
10 Sobic.002G123000 expressed protein K09122: uncharacterized protein
11 Sobic.010G126000 WD-40 repeat family protein, putative, expressed -
12 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
13 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
14 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
15 Sobic.004G021200 expressed protein -
16 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
17 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
18 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
19 Sobic.008G083000 ZOS12-03 - C2H2 zinc finger protein, expressed -
20 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase


Gene co-expression network
sample Sobic005G106500 Sobic005G106500 Sobic001G227200 Sobic001G227200 Sobic005G106500--Sobic001G227200 Sobic004G140600 Sobic004G140600 Sobic005G106500--Sobic004G140600 Sobic001G219600 Sobic001G219600 Sobic005G106500--Sobic001G219600 Sobic010G279700 Sobic010G279700 Sobic005G106500--Sobic010G279700 Sobic007G203200 Sobic007G203200 Sobic005G106500--Sobic007G203200 Sobic001G493200 Sobic001G493200 Sobic005G106500--Sobic001G493200 Sobic009G024400 Sobic009G024400 Sobic005G106500--Sobic009G024400 Sobic003G266001 Sobic003G266001 Sobic005G106500--Sobic003G266001 Sobic006G194400 Sobic006G194400 Sobic005G106500--Sobic006G194400 Sobic001G227200--Sobic004G140600 Sobic009G177500 Sobic009G177500 Sobic001G227200--Sobic009G177500 Sobic001G227200--Sobic005G106500 Sobic010G139000 Sobic010G139000 Sobic001G227200--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G456900 Sobic001G456900 Sobic001G227200--Sobic001G456900 Sobic004G140600--Sobic001G227200 Sobic004G140600--Sobic009G177500 Sobic008G063300 Sobic008G063300 Sobic004G140600--Sobic008G063300 Sobic009G132700 Sobic009G132700 Sobic004G140600--Sobic009G132700 Sobic001G455600 Sobic001G455600 Sobic004G140600--Sobic001G455600 Sobic004G140600--Sobic010G139000 Sobic004G140600--Sobic002G343901 Sobic004G140600--Sobic001G219600 Sobic001G433800 Sobic001G433800 Sobic004G140600--Sobic001G433800 Sobic009G260500 Sobic009G260500 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic001G281600 Sobic001G281600 Sobic010G279700--Sobic001G281600 Sobic008G083000 Sobic008G083000 Sobic010G279700--Sobic008G083000 Sobic003G401100 Sobic003G401100 Sobic010G279700--Sobic003G401100 Sobic001G094900 Sobic001G094900 Sobic010G279700--Sobic001G094900 Sobic007G191700 Sobic007G191700 Sobic010G279700--Sobic007G191700 Sobic010G279700--Sobic005G106500 Sobic008G092300 Sobic008G092300 Sobic010G279700--Sobic008G092300 Sobic010G279700--Sobic007G203200 Sobic004G021200 Sobic004G021200 Sobic010G279700--Sobic004G021200 Sobic010G145800 Sobic010G145800 Sobic007G203200--Sobic010G145800 Sobic009G050900 Sobic009G050900 Sobic007G203200--Sobic009G050900 Sobic001G407200 Sobic001G407200 Sobic007G203200--Sobic001G407200 Sobic007G203200--Sobic001G281600 Sobic010G140400 Sobic010G140400 Sobic007G203200--Sobic010G140400 Sobic007G203200--Sobic010G279700 Sobic007G203200--Sobic005G106500 Sobic007G203200--Sobic003G401100 Sobic006G118700 Sobic006G118700 Sobic007G203200--Sobic006G118700 Sobic009G084900 Sobic009G084900 Sobic001G493200--Sobic009G084900 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic001G124000 Sobic001G124000 Sobic009G024400--Sobic001G124000 Sobic009G024400--Sobic001G227200 Sobic007G159900 Sobic007G159900 Sobic009G024400--Sobic007G159900 Sobic009G024400--Sobic003G266001 Sobic009G024400--Sobic004G140600 Sobic009G024400--Sobic005G106500 Sobic009G024400--Sobic009G132700 Sobic008G113100 Sobic008G113100 Sobic009G024400--Sobic008G113100 Sobic003G170900 Sobic003G170900 Sobic009G024400--Sobic003G170900 Sobic003G266001--Sobic001G493200 Sobic005G128400 Sobic005G128400 Sobic003G266001--Sobic005G128400 Sobic008G103200 Sobic008G103200 Sobic003G266001--Sobic008G103200 Sobic010G069100 Sobic010G069100 Sobic003G266001--Sobic010G069100 Sobic003G266001--Sobic003G408600 Sobic003G266001--Sobic004G072100 Sobic003G266001--Sobic004G021200 Sobic003G266001--Sobic001G311500 Sobic003G266001--Sobic007G159900 Sobic008G131000 Sobic008G131000 Sobic006G194400--Sobic008G131000 Sobic006G194400--Sobic005G106500 Sobic006G194400--Sobic001G227200 Sobic006G194400--Sobic007G203200 Sobic001G360900 Sobic001G360900 Sobic006G194400--Sobic001G360900 Sobic010G236400 Sobic010G236400 Sobic006G194400--Sobic010G236400 Sobic006G194400--Sobic003G141500 Sobic002G396000 Sobic002G396000 Sobic006G194400--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic006G194400--Sobic010G209400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.