Gene annotation
Transcriptome id Sobic.002G123000.4,Sobic.002G123000.3,Sobic.002G123000.7,Sobic.002G123000.5,Sobic.002G123000.2,Sobic.002G123000.6,Sobic.002G123000.1
Synonym Sb02g010640
Functional annotation expressed protein
UniProt C5X531 , A0A1W0W3E9 , A0A1W0W3H2 , A0A1W0W3I0
Pfam PF01612 PF01612 PF01927 PF01927 PF01612
Panther DB PTHR12124 PTHR12124:SF38
NCBI CDD KOG2207; Predicted 3'-5' exonuclease
KEGG Orthology K09122; uncharacterized protein
Gene Ontology GO:0008408; 3'-5' exonuclease activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G24340 : 3\'-5\' exonuclease domain-containing protein
RAP-DB (Rice) LOC_Os07g26920.1,LOC_Os07g26930.2 : expressed protein
MaizeGDB (Corn) Zm00025a013556
Brachypodium KQK16429 , KQK16430
Barley HORVU6Hr1G077320.7 , HORVU6Hr1G077320.6 , HORVU6Hr1G077320.5 , HORVU6Hr1G077320.4 , HORVU6Hr1G077320.3 , HORVU6Hr1G077320.2 , HORVU6Hr1G077320.1 , HORVU6Hr1G077320.9 , HORVU6Hr1G077320.8 , HORVU6Hr1G077320.17 , HORVU6Hr1G077320.16 , HORVU6Hr1G077320.15 , HORVU6Hr1G077320.14 , HORVU6Hr1G077320.13 , HORVU6Hr1G077320.12 , HORVU6Hr1G077320.11 , HORVU6Hr1G077320.10
Wheat TraesCS6D02G293500 , TraesCS6A02G314200 , TraesCS6D02G293500 , TraesCS6B02G344200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
2 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
3 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6
4 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
5 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
6 Sobic.003G164200 cullin, putative, expressed K03347: CUL1, cullin 1
7 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
8 Sobic.003G143200 expressed protein -
9 Sobic.002G126500 RNA recognition motif containing protein, expressed -
10 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
11 Sobic.009G050900 heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed K10532: heparan-alpha-glucosaminide N-acetyltransferase
12 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
13 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
14 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
15 Sobic.010G126000 WD-40 repeat family protein, putative, expressed -
16 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
17 Sobic.007G194300 sulfite oxidase, putative, expressed K00387: sulfite oxidase
18 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
19 Sobic.008G179700 TATA-binding protein, putative, expressed K03120: TBP, transcription initiation factor TFIID TATA-box-binding protein
20 Sobic.009G032500 expressed protein -


Gene co-expression network
sample Sobic002G123000 Sobic002G123000 Sobic005G106500 Sobic005G106500 Sobic002G123000--Sobic005G106500 Sobic001G281600 Sobic001G281600 Sobic002G123000--Sobic001G281600 Sobic008G112800 Sobic008G112800 Sobic002G123000--Sobic008G112800 Sobic004G084300 Sobic004G084300 Sobic002G123000--Sobic004G084300 Sobic001G227200 Sobic001G227200 Sobic002G123000--Sobic001G227200 Sobic003G164200 Sobic003G164200 Sobic002G123000--Sobic003G164200 Sobic001G392300 Sobic001G392300 Sobic002G123000--Sobic001G392300 Sobic003G143200 Sobic003G143200 Sobic002G123000--Sobic003G143200 Sobic002G126500 Sobic002G126500 Sobic002G123000--Sobic002G126500 Sobic005G106500--Sobic001G227200 Sobic004G140600 Sobic004G140600 Sobic005G106500--Sobic004G140600 Sobic001G219600 Sobic001G219600 Sobic005G106500--Sobic001G219600 Sobic010G279700 Sobic010G279700 Sobic005G106500--Sobic010G279700 Sobic007G203200 Sobic007G203200 Sobic005G106500--Sobic007G203200 Sobic001G493200 Sobic001G493200 Sobic005G106500--Sobic001G493200 Sobic009G024400 Sobic009G024400 Sobic005G106500--Sobic009G024400 Sobic003G266001 Sobic003G266001 Sobic005G106500--Sobic003G266001 Sobic006G194400 Sobic006G194400 Sobic005G106500--Sobic006G194400 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic009G215800 Sobic009G215800 Sobic001G281600--Sobic009G215800 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic004G274200 Sobic004G274200 Sobic008G112800--Sobic004G274200 Sobic010G236400 Sobic010G236400 Sobic008G112800--Sobic010G236400 Sobic008G112800--Sobic001G392300 Sobic008G112800--Sobic002G126500 Sobic009G044800 Sobic009G044800 Sobic008G112800--Sobic009G044800 Sobic007G132100 Sobic007G132100 Sobic008G112800--Sobic007G132100 Sobic004G257100 Sobic004G257100 Sobic008G112800--Sobic004G257100 Sobic008G112800--Sobic008G179700 Sobic001G124200 Sobic001G124200 Sobic008G112800--Sobic001G124200 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic001G227200--Sobic004G140600 Sobic009G177500 Sobic009G177500 Sobic001G227200--Sobic009G177500 Sobic001G227200--Sobic005G106500 Sobic010G139000 Sobic010G139000 Sobic001G227200--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G456900 Sobic001G456900 Sobic001G227200--Sobic001G456900 Sobic008G118200 Sobic008G118200 Sobic003G164200--Sobic008G118200 Sobic003G164200--Sobic001G392300 Sobic008G089100 Sobic008G089100 Sobic003G164200--Sobic008G089100 Sobic009G088000 Sobic009G088000 Sobic003G164200--Sobic009G088000 Sobic004G039600 Sobic004G039600 Sobic003G164200--Sobic004G039600 Sobic006G041600 Sobic006G041600 Sobic003G164200--Sobic006G041600 Sobic002G133300 Sobic002G133300 Sobic003G164200--Sobic002G133300 Sobic010G275500 Sobic010G275500 Sobic003G164200--Sobic010G275500 Sobic010G112100 Sobic010G112100 Sobic003G164200--Sobic010G112100 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic001G392300--Sobic008G047800 Sobic001G392300--Sobic006G200600 Sobic004G092500 Sobic004G092500 Sobic003G143200--Sobic004G092500 Sobic001G405600 Sobic001G405600 Sobic003G143200--Sobic001G405600 Sobic007G017800 Sobic007G017800 Sobic003G143200--Sobic007G017800 Sobic002G347000 Sobic002G347000 Sobic003G143200--Sobic002G347000 Sobic003G143200--Sobic007G132100 Sobic003G443100 Sobic003G443100 Sobic003G143200--Sobic003G443100 Sobic005G138300 Sobic005G138300 Sobic003G143200--Sobic005G138300 Sobic007G125000 Sobic007G125000 Sobic003G143200--Sobic007G125000 Sobic002G260400 Sobic002G260400 Sobic003G143200--Sobic002G260400 Sobic002G126500--Sobic010G236400 Sobic003G029100 Sobic003G029100 Sobic002G126500--Sobic003G029100 Sobic002G126500--Sobic003G241200 Sobic002G126500--Sobic004G084300 Sobic001G375700 Sobic001G375700 Sobic002G126500--Sobic001G375700 Sobic002G126500--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic002G126500--Sobic008G112800
Octagon: transcription factors


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