Gene annotation
Transcriptome id Sobic.004G087600.2,Sobic.004G087600.1
Synonym Sb04g007250
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A194YPK8 , A0A194YNG5
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF416
NCBI CDD KOG0107; Alternative splicing factor SRp20/9G8 (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G19960 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g11750.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020232 , Zm00025a034597
Brachypodium -
Barley -
Wheat TraesCS6D02G166200 , TraesCS6D02G166200
Populus -


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cDNA sequences
Sobic.004G087600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
2 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
3 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
4 Sobic.002G031400 OsFBL39 - F-box domain and LRR containing protein, expressed -
5 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
6 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
7 Sobic.001G281600 cyclin-dependent kinase E-1, putative, expressed K02208: cyclin-dependent kinase 8/11
8 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
9 Sobic.001G360900 peptidyl-prolyl isomerase PASTICCINO1, putative, expressed -
10 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
11 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
12 Sobic.002G313400 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12815: DHX38, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16
13 Sobic.002G336800 PPR repeat domain containing protein, putative, expressed -
14 Sobic.007G078500 serine/threonine-protein kinase HT1, putative, expressed -
15 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
16 Sobic.010G143800 expressed protein -
17 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
18 Sobic.002G298100 expressed protein -
19 Sobic.003G018900 bromodomain containing protein, expressed K11684: bromodomain-containing factor 1
20 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase


Gene co-expression network
sample Sobic004G087600 Sobic004G087600 Sobic008G011100 Sobic008G011100 Sobic004G087600--Sobic008G011100 Sobic004G018300 Sobic004G018300 Sobic004G087600--Sobic004G018300 Sobic005G106500 Sobic005G106500 Sobic004G087600--Sobic005G106500 Sobic002G031400 Sobic002G031400 Sobic004G087600--Sobic002G031400 Sobic002G309800 Sobic002G309800 Sobic004G087600--Sobic002G309800 Sobic003G133900 Sobic003G133900 Sobic004G087600--Sobic003G133900 Sobic001G281600 Sobic001G281600 Sobic004G087600--Sobic001G281600 Sobic001G124000 Sobic001G124000 Sobic004G087600--Sobic001G124000 Sobic001G360900 Sobic001G360900 Sobic004G087600--Sobic001G360900 Sobic001G219600 Sobic001G219600 Sobic008G011100--Sobic001G219600 Sobic004G039200 Sobic004G039200 Sobic008G011100--Sobic004G039200 Sobic008G011100--Sobic004G087600 Sobic008G011100--Sobic002G031400 Sobic009G260500 Sobic009G260500 Sobic008G011100--Sobic009G260500 Sobic008G011100--Sobic004G018300 Sobic001G167200 Sobic001G167200 Sobic008G011100--Sobic001G167200 Sobic009G065100 Sobic009G065100 Sobic008G011100--Sobic009G065100 Sobic001G311500 Sobic001G311500 Sobic008G011100--Sobic001G311500 Sobic004G018300--Sobic004G087600 Sobic004G018300--Sobic001G167200 Sobic004G018300--Sobic008G011100 Sobic002G158700 Sobic002G158700 Sobic004G018300--Sobic002G158700 Sobic002G396000 Sobic002G396000 Sobic004G018300--Sobic002G396000 Sobic001G081000 Sobic001G081000 Sobic004G018300--Sobic001G081000 Sobic008G083000 Sobic008G083000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic001G227200 Sobic001G227200 Sobic005G106500--Sobic001G227200 Sobic004G140600 Sobic004G140600 Sobic005G106500--Sobic004G140600 Sobic005G106500--Sobic001G219600 Sobic010G279700 Sobic010G279700 Sobic005G106500--Sobic010G279700 Sobic007G203200 Sobic007G203200 Sobic005G106500--Sobic007G203200 Sobic001G493200 Sobic001G493200 Sobic005G106500--Sobic001G493200 Sobic009G024400 Sobic009G024400 Sobic005G106500--Sobic009G024400 Sobic003G266001 Sobic003G266001 Sobic005G106500--Sobic003G266001 Sobic006G194400 Sobic006G194400 Sobic005G106500--Sobic006G194400 Sobic010G277500 Sobic010G277500 Sobic002G031400--Sobic010G277500 Sobic007G161000 Sobic007G161000 Sobic002G031400--Sobic007G161000 Sobic001G035900 Sobic001G035900 Sobic002G031400--Sobic001G035900 Sobic003G254000 Sobic003G254000 Sobic002G031400--Sobic003G254000 Sobic002G031400--Sobic008G011100 Sobic010G176550 Sobic010G176550 Sobic002G031400--Sobic010G176550 Sobic003G280800 Sobic003G280800 Sobic002G031400--Sobic003G280800 Sobic002G031400--Sobic009G260500 Sobic004G258700 Sobic004G258700 Sobic002G031400--Sobic004G258700 Sobic002G309800--Sobic009G065100 Sobic001G253200 Sobic001G253200 Sobic002G309800--Sobic001G253200 Sobic010G056200 Sobic010G056200 Sobic002G309800--Sobic010G056200 Sobic007G054400 Sobic007G054400 Sobic002G309800--Sobic007G054400 Sobic009G215800 Sobic009G215800 Sobic002G309800--Sobic009G215800 Sobic005G079800 Sobic005G079800 Sobic002G309800--Sobic005G079800 Sobic009G070100 Sobic009G070100 Sobic002G309800--Sobic009G070100 Sobic007G078600 Sobic007G078600 Sobic002G309800--Sobic007G078600 Sobic002G309800--Sobic004G087600 Sobic004G309900 Sobic004G309900 Sobic003G133900--Sobic004G309900 Sobic003G133900--Sobic001G493200 Sobic002G083500 Sobic002G083500 Sobic003G133900--Sobic002G083500 Sobic001G398800 Sobic001G398800 Sobic003G133900--Sobic001G398800 Sobic007G183900 Sobic007G183900 Sobic003G133900--Sobic007G183900 Sobic005G172500 Sobic005G172500 Sobic003G133900--Sobic005G172500 Sobic006G210000 Sobic006G210000 Sobic003G133900--Sobic006G210000 Sobic004G200200 Sobic004G200200 Sobic003G133900--Sobic004G200200 Sobic007G071200 Sobic007G071200 Sobic003G133900--Sobic007G071200 Sobic001G281600--Sobic010G279700 Sobic007G078500 Sobic007G078500 Sobic001G281600--Sobic007G078500 Sobic006G200600 Sobic006G200600 Sobic001G281600--Sobic006G200600 Sobic003G401100 Sobic003G401100 Sobic001G281600--Sobic003G401100 Sobic004G121100 Sobic004G121100 Sobic001G281600--Sobic004G121100 Sobic001G281600--Sobic009G215800 Sobic004G084300 Sobic004G084300 Sobic001G281600--Sobic004G084300 Sobic009G050900 Sobic009G050900 Sobic001G281600--Sobic009G050900 Sobic008G179700 Sobic008G179700 Sobic001G281600--Sobic008G179700 Sobic001G124000--Sobic009G024400 Sobic001G124000--Sobic004G039200 Sobic008G113100 Sobic008G113100 Sobic001G124000--Sobic008G113100 Sobic004G208900 Sobic004G208900 Sobic001G124000--Sobic004G208900 Sobic001G124000--Sobic001G227200 Sobic007G117400 Sobic007G117400 Sobic001G124000--Sobic007G117400 Sobic001G124000--Sobic009G065100 Sobic001G124000--Sobic010G277500 Sobic001G124000--Sobic008G011100 Sobic001G360900--Sobic009G065100 Sobic005G084100 Sobic005G084100 Sobic001G360900--Sobic005G084100 Sobic003G163100 Sobic003G163100 Sobic001G360900--Sobic003G163100 Sobic001G360900--Sobic007G054400 Sobic001G360900--Sobic001G253200 Sobic001G360900--Sobic008G011100 Sobic006G210100 Sobic006G210100 Sobic001G360900--Sobic006G210100 Sobic001G360900--Sobic004G018300 Sobic001G360900--Sobic004G084300
Octagon: transcription factors


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