Gene annotation
Transcriptome id Sobic.004G018300.1
Synonym FIO1, Sb04g001730
Functional annotation expressed protein
UniProt C5XT05
Pfam PF05971
Panther DB PTHR13393 PTHR13393:SF0
NCBI CDD -
KEGG Orthology K06970; 23S rRNA (adenine1618-N6)-methyltransferase
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT2G21070 : methyltransferases
RAP-DB (Rice) LOC_Os02g02880.1 : expressed protein
MaizeGDB (Corn) Zm00025a034915
Brachypodium KQJ92975 , KQJ92974 , KQJ92976
Barley HORVU6Hr1G012530.3 , HORVU6Hr1G012530.2 , HORVU6Hr1G012530.1 , HORVU6Hr1G012530.7 , HORVU6Hr1G012530.6 , HORVU6Hr1G012530.4 , HORVU6Hr1G012530.9 , HORVU6Hr1G012530.8 , HORVU6Hr1G012530.13 , HORVU6Hr1G012530.12 , HORVU6Hr1G012530.11 , HORVU6Hr1G012530.10 , HORVU6Hr1G012530.17 , HORVU6Hr1G012530.16 , HORVU6Hr1G012530.15 , HORVU6Hr1G012530.14 , HORVU6Hr1G012530.18
Wheat TraesCS6A02G069400 , TraesCS6A02G069400 , TraesCS6B02G093700 , TraesCS6B02G093700 , TraesCS6D02G067400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G087600 RNA recognition motif containing protein, putative, expressed -
2 Sobic.001G167200 DNA-directed polymerase, putative, expressed K03511: DNA polymerase kappa
3 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
4 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
5 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
6 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
7 Sobic.008G083000 ZOS12-03 - C2H2 zinc finger protein, expressed -
8 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
9 Sobic.004G223600 transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
10 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
11 Sobic.001G360900 peptidyl-prolyl isomerase PASTICCINO1, putative, expressed -
12 Sobic.008G131000 domain of unknown function family protein, expressed -
13 Sobic.005G015900 dnaJ domain containing protein, expressed -
14 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
15 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
16 Sobic.005G106500 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K11165: dehydrogenase/reductase SDR family member 7
17 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
18 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
19 Sobic.003G106200 expressed protein K13144: integrator complex subunit 7
20 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G018300 Sobic004G018300 Sobic004G087600 Sobic004G087600 Sobic004G018300--Sobic004G087600 Sobic001G167200 Sobic001G167200 Sobic004G018300--Sobic001G167200 Sobic008G011100 Sobic008G011100 Sobic004G018300--Sobic008G011100 Sobic002G158700 Sobic002G158700 Sobic004G018300--Sobic002G158700 Sobic002G396000 Sobic002G396000 Sobic004G018300--Sobic002G396000 Sobic001G081000 Sobic001G081000 Sobic004G018300--Sobic001G081000 Sobic008G083000 Sobic008G083000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic004G087600--Sobic008G011100 Sobic004G087600--Sobic004G018300 Sobic005G106500 Sobic005G106500 Sobic004G087600--Sobic005G106500 Sobic002G031400 Sobic002G031400 Sobic004G087600--Sobic002G031400 Sobic002G309800 Sobic002G309800 Sobic004G087600--Sobic002G309800 Sobic003G133900 Sobic003G133900 Sobic004G087600--Sobic003G133900 Sobic001G281600 Sobic001G281600 Sobic004G087600--Sobic001G281600 Sobic001G124000 Sobic001G124000 Sobic004G087600--Sobic001G124000 Sobic001G360900 Sobic001G360900 Sobic004G087600--Sobic001G360900 Sobic001G167200--Sobic002G158700 Sobic009G210500 Sobic009G210500 Sobic001G167200--Sobic009G210500 Sobic001G167200--Sobic004G018300 Sobic005G015900 Sobic005G015900 Sobic001G167200--Sobic005G015900 Sobic001G167200--Sobic008G011100 Sobic001G090400 Sobic001G090400 Sobic001G167200--Sobic001G090400 Sobic001G219600 Sobic001G219600 Sobic001G167200--Sobic001G219600 Sobic010G136600 Sobic010G136600 Sobic001G167200--Sobic010G136600 Sobic010G065300 Sobic010G065300 Sobic001G167200--Sobic010G065300 Sobic008G011100--Sobic001G219600 Sobic004G039200 Sobic004G039200 Sobic008G011100--Sobic004G039200 Sobic008G011100--Sobic004G087600 Sobic008G011100--Sobic002G031400 Sobic009G260500 Sobic009G260500 Sobic008G011100--Sobic009G260500 Sobic008G011100--Sobic004G018300 Sobic008G011100--Sobic001G167200 Sobic009G065100 Sobic009G065100 Sobic008G011100--Sobic009G065100 Sobic001G311500 Sobic001G311500 Sobic008G011100--Sobic001G311500 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic002G158700--Sobic001G167200 Sobic004G031700 Sobic004G031700 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G158700--Sobic002G396000 Sobic002G396000--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic002G396000--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic002G396000--Sobic007G096000 Sobic003G280800 Sobic003G280800 Sobic002G396000--Sobic003G280800 Sobic001G511500 Sobic001G511500 Sobic002G396000--Sobic001G511500 Sobic002G396000--Sobic009G210500 Sobic002G396000--Sobic004G018300 Sobic008G131000 Sobic008G131000 Sobic002G396000--Sobic008G131000 Sobic002G396000--Sobic001G090400 Sobic001G081000--Sobic004G018300 Sobic003G221600 Sobic003G221600 Sobic001G081000--Sobic003G221600 Sobic001G081000--Sobic008G131000 Sobic003G141500 Sobic003G141500 Sobic001G081000--Sobic003G141500 Sobic008G014500 Sobic008G014500 Sobic001G081000--Sobic008G014500 Sobic003G258900 Sobic003G258900 Sobic001G081000--Sobic003G258900 Sobic001G081000--Sobic008G083000 Sobic007G220300 Sobic007G220300 Sobic001G081000--Sobic007G220300 Sobic009G145101 Sobic009G145101 Sobic001G081000--Sobic009G145101 Sobic005G084100 Sobic005G084100 Sobic008G083000--Sobic005G084100 Sobic010G279700 Sobic010G279700 Sobic008G083000--Sobic010G279700 Sobic008G083000--Sobic008G131000 Sobic008G083000--Sobic001G281600 Sobic009G050900 Sobic009G050900 Sobic008G083000--Sobic009G050900 Sobic003G401100 Sobic003G401100 Sobic008G083000--Sobic003G401100 Sobic008G083000--Sobic008G011100 Sobic008G083000--Sobic004G018300 Sobic008G083000--Sobic007G000800 Sobic003G052200 Sobic003G052200 Sobic009G126400--Sobic003G052200 Sobic009G040600 Sobic009G040600 Sobic009G126400--Sobic009G040600 Sobic008G047800 Sobic008G047800 Sobic009G126400--Sobic008G047800 Sobic009G126400--Sobic003G280800 Sobic001G222500 Sobic001G222500 Sobic009G126400--Sobic001G222500 Sobic008G162900 Sobic008G162900 Sobic009G126400--Sobic008G162900 Sobic009G126400--Sobic007G096000 Sobic004G208900 Sobic004G208900 Sobic009G126400--Sobic004G208900 Sobic002G309600 Sobic002G309600 Sobic009G126400--Sobic002G309600 Sobic001G219900 Sobic001G219900 Sobic004G223600--Sobic001G219900 Sobic001G214600 Sobic001G214600 Sobic004G223600--Sobic001G214600 Sobic002G317200 Sobic002G317200 Sobic004G223600--Sobic002G317200 Sobic003G307000 Sobic003G307000 Sobic004G223600--Sobic003G307000 Sobic007G042400 Sobic007G042400 Sobic004G223600--Sobic007G042400 Sobic009G247400 Sobic009G247400 Sobic004G223600--Sobic009G247400 Sobic004G223600--Sobic001G311500 Sobic002G071500 Sobic002G071500 Sobic004G223600--Sobic002G071500 Sobic003G152400 Sobic003G152400 Sobic004G223600--Sobic003G152400
Octagon: transcription factors


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