Gene annotation
Transcriptome id Sobic.008G131000.1
Synonym Sb08g018330
Functional annotation domain of unknown function family protein, expressed
UniProt C5YPU5
Pfam PF00581 PF12368 PF03959
Panther DB PTHR22778 PTHR22778:SF0
NCBI CDD KOG2551; Phospholipase/carboxyhydrolase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09280 : -
RAP-DB (Rice) LOC_Os12g37630.1 : domain of unknown function family protein, expressed
MaizeGDB (Corn) Zm00025a004165
Brachypodium KQJ86306 , KQJ86305 , KQJ86304
Barley -
Wheat TraesCS5D02G099900 , TraesCS5D02G099900 , TraesCS5A02G086400 , TraesCS5A02G086400 , TraesCS5B02G092300 , TraesCS5B02G092300 , TraesCS5B02G092300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
2 Sobic.008G083000 ZOS12-03 - C2H2 zinc finger protein, expressed -
3 Sobic.003G266001 - -
4 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
5 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
6 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
7 Sobic.006G194400 cyclin-T1-4, putative, expressed K15188: cyclin T
8 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
9 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
10 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
11 Sobic.007G220300 WD domain, G-beta repeat domain containing protein, expressed K11374: elongator complex protein 2
12 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
13 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
14 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
15 Sobic.007G031600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.006G102100 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
17 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
18 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
19 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
20 Sobic.007G000800 expressed protein -


Gene co-expression network
sample Sobic008G131000 Sobic008G131000 Sobic010G236400 Sobic010G236400 Sobic008G131000--Sobic010G236400 Sobic008G083000 Sobic008G083000 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic002G396000 Sobic002G396000 Sobic008G131000--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic008G131000--Sobic010G209400 Sobic003G401100 Sobic003G401100 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic003G187500 Sobic003G187500 Sobic008G131000--Sobic003G187500 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic010G236400--Sobic003G401100 Sobic005G084100 Sobic005G084100 Sobic008G083000--Sobic005G084100 Sobic010G279700 Sobic010G279700 Sobic008G083000--Sobic010G279700 Sobic008G083000--Sobic008G131000 Sobic001G281600 Sobic001G281600 Sobic008G083000--Sobic001G281600 Sobic009G050900 Sobic009G050900 Sobic008G083000--Sobic009G050900 Sobic008G083000--Sobic003G401100 Sobic008G011100 Sobic008G011100 Sobic008G083000--Sobic008G011100 Sobic004G018300 Sobic004G018300 Sobic008G083000--Sobic004G018300 Sobic007G000800 Sobic007G000800 Sobic008G083000--Sobic007G000800 Sobic001G493200 Sobic001G493200 Sobic003G266001--Sobic001G493200 Sobic005G128400 Sobic005G128400 Sobic003G266001--Sobic005G128400 Sobic008G103200 Sobic008G103200 Sobic003G266001--Sobic008G103200 Sobic003G266001--Sobic010G069100 Sobic003G408600 Sobic003G408600 Sobic003G266001--Sobic003G408600 Sobic004G072100 Sobic004G072100 Sobic003G266001--Sobic004G072100 Sobic004G021200 Sobic004G021200 Sobic003G266001--Sobic004G021200 Sobic001G311500 Sobic001G311500 Sobic003G266001--Sobic001G311500 Sobic007G159900 Sobic007G159900 Sobic003G266001--Sobic007G159900 Sobic002G158700 Sobic002G158700 Sobic002G396000--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic002G396000--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic002G396000--Sobic007G096000 Sobic003G280800 Sobic003G280800 Sobic002G396000--Sobic003G280800 Sobic001G511500 Sobic001G511500 Sobic002G396000--Sobic001G511500 Sobic009G210500 Sobic009G210500 Sobic002G396000--Sobic009G210500 Sobic002G396000--Sobic004G018300 Sobic002G396000--Sobic008G131000 Sobic001G090400 Sobic001G090400 Sobic002G396000--Sobic001G090400 Sobic010G209400--Sobic010G236400 Sobic010G209400--Sobic004G084300 Sobic010G209400--Sobic009G210500 Sobic010G209400--Sobic001G511500 Sobic001G542700 Sobic001G542700 Sobic010G209400--Sobic001G542700 Sobic009G040600 Sobic009G040600 Sobic010G209400--Sobic009G040600 Sobic003G038500 Sobic003G038500 Sobic010G209400--Sobic003G038500 Sobic010G209400--Sobic008G131000 Sobic008G047800 Sobic008G047800 Sobic010G209400--Sobic008G047800 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic003G401100--Sobic001G281600 Sobic003G081000 Sobic003G081000 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic003G401100--Sobic007G000800 Sobic003G401100--Sobic004G274200 Sobic003G241200 Sobic003G241200 Sobic003G401100--Sobic003G241200 Sobic006G194400--Sobic008G131000 Sobic005G106500 Sobic005G106500 Sobic006G194400--Sobic005G106500 Sobic001G227200 Sobic001G227200 Sobic006G194400--Sobic001G227200 Sobic007G203200 Sobic007G203200 Sobic006G194400--Sobic007G203200 Sobic001G360900 Sobic001G360900 Sobic006G194400--Sobic001G360900 Sobic006G194400--Sobic010G236400 Sobic003G141500 Sobic003G141500 Sobic006G194400--Sobic003G141500 Sobic006G194400--Sobic002G396000 Sobic006G194400--Sobic010G209400 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic010G053800 Sobic010G053800 Sobic003G187500--Sobic010G053800 Sobic003G187500--Sobic004G072100 Sobic007G132100 Sobic007G132100 Sobic003G187500--Sobic007G132100 Sobic002G310200 Sobic002G310200 Sobic003G187500--Sobic002G310200 Sobic010G275500 Sobic010G275500 Sobic003G187500--Sobic010G275500 Sobic003G187500--Sobic008G047800 Sobic004G039600 Sobic004G039600 Sobic003G187500--Sobic004G039600 Sobic006G012500 Sobic006G012500 Sobic003G187500--Sobic006G012500 Sobic003G187500--Sobic010G236400
Octagon: transcription factors


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