Gene annotation
Transcriptome id Sobic.010G209400.3,Sobic.010G209400.4,Sobic.010G209400.2,Sobic.010G209400.1
Synonym TAF5, Sb10g025620
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A194YKJ9 , A0A194YLN1 , A0A194YKJ4 , A0A1W0VU21
Pfam PF00400 PF04494
Panther DB PTHR19879 PTHR19879:SF1
NCBI CDD KOG0263; Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA)
KEGG Orthology K03130; transcription initiation factor TFIID subunit 5
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G25150 : TBP-associated factor 5
RAP-DB (Rice) LOC_Os06g44030.2,LOC_Os06g44030.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012969 , Zm00025a051606 , Zm00025a041499
Brachypodium KQK16832
Barley HORVU7Hr1G113760.17 , HORVU7Hr1G113760.16 , HORVU7Hr1G113760.15 , HORVU7Hr1G113760.14 , HORVU7Hr1G113760.13 , HORVU7Hr1G113760.12 , HORVU7Hr1G113760.11 , HORVU7Hr1G113760.10 , HORVU7Hr1G113760.19 , HORVU7Hr1G113760.18 , HORVU7Hr1G113760.6 , HORVU7Hr1G113760.5 , HORVU7Hr1G113760.4 , HORVU7Hr1G113760.22 , HORVU7Hr1G113760.23 , HORVU7Hr1G113760.20 , HORVU7Hr1G113760.21 , HORVU0Hr1G022460.3 , HORVU3Hr1G062000.1 , HORVU7Hr1G113760.9 , HORVU7Hr1G113760.8 , HORVU7Hr1G113760.7 , HORVU7Hr1G113760.3 , HORVU7Hr1G113760.2 , HORVU7Hr1G113760.1 , HORVU0Hr1G022460.4 , HORVU0Hr1G022460.5 , HORVU0Hr1G022460.7 , HORVU0Hr1G022460.1 , HORVU0Hr1G022460.2
Wheat TraesCS7D02G496500 , TraesCS7A02G467500 , TraesCS5A02G317800 , TraesCS5D02G324200 , TraesCS5D02G324200 , TraesCS7B02G416400 , TraesCS5B02G318400 , TraesCS7A02G508300 , TraesCS7A02G508300
Populus -


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cDNA sequences
Sobic.010G209400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
2 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
3 Sobic.009G210500 expressed protein -
4 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
5 Sobic.001G542700 expressed protein -
6 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
7 Sobic.003G038500 SSRP1-like FACT complex subunit, putative, expressed K09272: structure-specific recognition protein 1
8 Sobic.008G131000 domain of unknown function family protein, expressed -
9 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
10 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
12 Sobic.001G167200 DNA-directed polymerase, putative, expressed K03511: DNA polymerase kappa
13 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
14 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
15 Sobic.006G032400 expressed protein -
16 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
17 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
18 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
19 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
20 Sobic.001G363500 DIRP family protein, putative, expressed -


Gene co-expression network
sample Sobic010G209400 Sobic010G209400 Sobic010G236400 Sobic010G236400 Sobic010G209400--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic010G209400--Sobic004G084300 Sobic009G210500 Sobic009G210500 Sobic010G209400--Sobic009G210500 Sobic001G511500 Sobic001G511500 Sobic010G209400--Sobic001G511500 Sobic001G542700 Sobic001G542700 Sobic010G209400--Sobic001G542700 Sobic009G040600 Sobic009G040600 Sobic010G209400--Sobic009G040600 Sobic003G038500 Sobic003G038500 Sobic010G209400--Sobic003G038500 Sobic008G131000 Sobic008G131000 Sobic010G209400--Sobic008G131000 Sobic008G047800 Sobic008G047800 Sobic010G209400--Sobic008G047800 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic002G320500 Sobic002G320500 Sobic009G210500--Sobic002G320500 Sobic007G065400 Sobic007G065400 Sobic009G210500--Sobic007G065400 Sobic002G157000 Sobic002G157000 Sobic009G210500--Sobic002G157000 Sobic006G032400 Sobic006G032400 Sobic009G210500--Sobic006G032400 Sobic003G268300 Sobic003G268300 Sobic009G210500--Sobic003G268300 Sobic001G407200 Sobic001G407200 Sobic009G210500--Sobic001G407200 Sobic007G167500 Sobic007G167500 Sobic009G210500--Sobic007G167500 Sobic001G090400 Sobic001G090400 Sobic009G210500--Sobic001G090400 Sobic004G145500 Sobic004G145500 Sobic009G210500--Sobic004G145500 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic001G511500--Sobic006G128900 Sobic003G119000 Sobic003G119000 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic001G511500--Sobic006G032400 Sobic004G009600 Sobic004G009600 Sobic001G542700--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic001G542700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic001G542700--Sobic001G241200 Sobic002G299700 Sobic002G299700 Sobic001G542700--Sobic002G299700 Sobic007G117400 Sobic007G117400 Sobic001G542700--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic001G542700--Sobic003G293200 Sobic001G542700--Sobic009G040600 Sobic007G061700 Sobic007G061700 Sobic001G542700--Sobic007G061700 Sobic001G542700--Sobic010G209400 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic008G028700 Sobic008G028700 Sobic009G040600--Sobic008G028700 Sobic002G309600 Sobic002G309600 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic003G038500--Sobic010G209400 Sobic007G126600 Sobic007G126600 Sobic003G038500--Sobic007G126600 Sobic003G422300 Sobic003G422300 Sobic003G038500--Sobic003G422300 Sobic004G257400 Sobic004G257400 Sobic003G038500--Sobic004G257400 Sobic007G026300 Sobic007G026300 Sobic003G038500--Sobic007G026300 Sobic003G038500--Sobic001G090400 Sobic003G038500--Sobic003G119000 Sobic002G248400 Sobic002G248400 Sobic003G038500--Sobic002G248400 Sobic003G038500--Sobic001G511500 Sobic008G131000--Sobic010G236400 Sobic008G083000 Sobic008G083000 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic002G396000 Sobic002G396000 Sobic008G131000--Sobic002G396000 Sobic008G131000--Sobic010G209400 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic008G131000--Sobic004G084300 Sobic003G187500 Sobic003G187500 Sobic008G131000--Sobic003G187500 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600
Octagon: transcription factors


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