Gene annotation
Transcriptome id Sobic.003G038500.1
Synonym HMG, NFD, SSRP1, Sb03g003450, ATHMG
Functional annotation SSRP1-like FACT complex subunit, putative, expressed
UniProt C5XMK7
Pfam PF00505 PF08512 PF03531
Panther DB PTHR13711 PTHR13711:SF199
NCBI CDD -
KEGG Orthology K09272; structure-specific recognition protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G28730 : high mobility group
RAP-DB (Rice) LOC_Os01g08970.1 : SSRP1-like FACT complex subunit, putative, expressed
MaizeGDB (Corn) Zm00025a035826 , Zm00025a043023
Brachypodium KQK03080 , KQK03079
Barley HORVU3Hr1G020300.10 , HORVU3Hr1G020300.11 , HORVU3Hr1G020300.40 , HORVU1Hr1G027620.4 , HORVU3Hr1G020300.27 , HORVU3Hr1G020300.26 , HORVU3Hr1G020300.25 , HORVU3Hr1G020300.24 , HORVU3Hr1G020300.23 , HORVU3Hr1G020300.22 , HORVU3Hr1G020300.21 , HORVU3Hr1G020300.20 , HORVU3Hr1G020300.29 , HORVU3Hr1G020300.28 , HORVU3Hr1G020300.34 , HORVU3Hr1G020300.35 , HORVU3Hr1G020300.36 , HORVU3Hr1G020300.37 , HORVU3Hr1G020300.30 , HORVU3Hr1G020300.31 , HORVU3Hr1G020300.32 , HORVU3Hr1G020300.33 , HORVU3Hr1G020300.38 , HORVU3Hr1G020300.39 , HORVU1Hr1G027620.10 , HORVU3Hr1G020300.18 , HORVU3Hr1G020300.19 , HORVU3Hr1G020300.16 , HORVU3Hr1G020300.17 , HORVU3Hr1G020300.14 , HORVU3Hr1G020300.15 , HORVU3Hr1G020300.12 , HORVU3Hr1G020300.13 , HORVU1Hr1G027620.5 , HORVU1Hr1G027620.6 , HORVU1Hr1G027620.7 , HORVU1Hr1G027620.1 , HORVU1Hr1G027620.2 , HORVU1Hr1G027620.3 , HORVU1Hr1G027620.8 , HORVU1Hr1G027620.9 , HORVU3Hr1G020300.8 , HORVU3Hr1G020300.9 , HORVU3Hr1G020300.4 , HORVU3Hr1G020300.5 , HORVU3Hr1G020300.6 , HORVU3Hr1G020300.7 , HORVU3Hr1G020300.1 , HORVU3Hr1G020300.2 , HORVU3Hr1G020300.3
Wheat TraesCS1D02G121900 , TraesCS1D02G121900 , TraesCS3B02G132000 , TraesCS3B02G132000 , TraesCS3B02G132000 , TraesCS3A02G111900 , TraesCS1A02G121000 , TraesCS3D02G114000 , TraesCS3D02G114000 , TraesCS3D02G114000 , TraesCS1B02G140400 , TraesCS1B02G140400 , TraesCS1B02G140400
Populus -


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cDNA sequences
Sobic.003G038500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
2 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
3 Sobic.003G422300 recA protein, expressed K03553: recombination protein RecA
4 Sobic.004G257400 WD-40 repeat family protein, putative, expressed -
5 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
6 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
7 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
8 Sobic.002G248400 ENT domain containing protein, expressed -
9 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
10 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
11 Sobic.003G268300 surp module family protein, putative, expressed -
12 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
13 Sobic.003G108700 RNA recognition motif, putative, expressed -
14 Sobic.003G372700 expressed protein -
15 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
16 Sobic.003G438400 expressed protein -
17 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
18 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
19 Sobic.008G078100 EDM2, putative, expressed -
20 Sobic.001G347300 splicing factor, arginine/serine-rich 16, putative, expressed K13168: splicing factor, arginine/serine-rich 16


Gene co-expression network
sample Sobic003G038500 Sobic003G038500 Sobic010G209400 Sobic010G209400 Sobic003G038500--Sobic010G209400 Sobic007G126600 Sobic007G126600 Sobic003G038500--Sobic007G126600 Sobic003G422300 Sobic003G422300 Sobic003G038500--Sobic003G422300 Sobic004G257400 Sobic004G257400 Sobic003G038500--Sobic004G257400 Sobic007G026300 Sobic007G026300 Sobic003G038500--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic003G038500--Sobic001G090400 Sobic003G119000 Sobic003G119000 Sobic003G038500--Sobic003G119000 Sobic002G248400 Sobic002G248400 Sobic003G038500--Sobic002G248400 Sobic001G511500 Sobic001G511500 Sobic003G038500--Sobic001G511500 Sobic010G236400 Sobic010G236400 Sobic010G209400--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic010G209400--Sobic004G084300 Sobic009G210500 Sobic009G210500 Sobic010G209400--Sobic009G210500 Sobic010G209400--Sobic001G511500 Sobic001G542700 Sobic001G542700 Sobic010G209400--Sobic001G542700 Sobic009G040600 Sobic009G040600 Sobic010G209400--Sobic009G040600 Sobic010G209400--Sobic003G038500 Sobic008G131000 Sobic008G131000 Sobic010G209400--Sobic008G131000 Sobic008G047800 Sobic008G047800 Sobic010G209400--Sobic008G047800 Sobic008G192600 Sobic008G192600 Sobic007G126600--Sobic008G192600 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G065400 Sobic007G065400 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic002G006900 Sobic002G006900 Sobic007G126600--Sobic002G006900 Sobic003G108700 Sobic003G108700 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic001G241200 Sobic001G241200 Sobic007G126600--Sobic001G241200 Sobic003G268300 Sobic003G268300 Sobic003G422300--Sobic003G268300 Sobic003G422300--Sobic002G248400 Sobic006G128900 Sobic006G128900 Sobic003G422300--Sobic006G128900 Sobic001G094000 Sobic001G094000 Sobic003G422300--Sobic001G094000 Sobic002G157000 Sobic002G157000 Sobic003G422300--Sobic002G157000 Sobic003G422300--Sobic001G090400 Sobic006G060100 Sobic006G060100 Sobic003G422300--Sobic006G060100 Sobic003G422300--Sobic001G511500 Sobic008G078100 Sobic008G078100 Sobic003G422300--Sobic008G078100 Sobic004G257400--Sobic002G248400 Sobic004G257400--Sobic003G108700 Sobic008G054500 Sobic008G054500 Sobic004G257400--Sobic008G054500 Sobic003G445400 Sobic003G445400 Sobic004G257400--Sobic003G445400 Sobic004G257400--Sobic007G026300 Sobic003G073000 Sobic003G073000 Sobic004G257400--Sobic003G073000 Sobic004G257400--Sobic001G090400 Sobic007G167500 Sobic007G167500 Sobic004G257400--Sobic007G167500 Sobic001G251700 Sobic001G251700 Sobic004G257400--Sobic001G251700 Sobic004G021100 Sobic004G021100 Sobic007G026300--Sobic004G021100 Sobic004G205600 Sobic004G205600 Sobic007G026300--Sobic004G205600 Sobic001G512700 Sobic001G512700 Sobic007G026300--Sobic001G512700 Sobic007G104800 Sobic007G104800 Sobic007G026300--Sobic007G104800 Sobic007G026300--Sobic004G257400 Sobic001G497300 Sobic001G497300 Sobic007G026300--Sobic001G497300 Sobic007G200600 Sobic007G200600 Sobic007G026300--Sobic007G200600 Sobic007G026300--Sobic001G090400 Sobic004G057400 Sobic004G057400 Sobic007G026300--Sobic004G057400 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic006G173100 Sobic006G173100 Sobic001G090400--Sobic006G173100 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic001G090400--Sobic002G320500 Sobic009G000500 Sobic009G000500 Sobic001G090400--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic001G090400--Sobic002G157300 Sobic001G090400--Sobic004G205600 Sobic001G090400--Sobic002G248400 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic003G119000--Sobic007G167500 Sobic003G119000--Sobic007G126600 Sobic003G119000--Sobic001G511500 Sobic002G309600 Sobic002G309600 Sobic003G119000--Sobic002G309600 Sobic003G119000--Sobic001G241200 Sobic002G248400--Sobic002G157000 Sobic002G248400--Sobic003G108700 Sobic002G248400--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G248400--Sobic003G200200 Sobic006G032400 Sobic006G032400 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic002G248400--Sobic004G257400 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic001G511500--Sobic006G032400
Octagon: transcription factors


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