Gene annotation
Transcriptome id Sobic.007G126600.4
Synonym Sb07g020335
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6PHH3
Pfam PF00076 PF01480
Panther DB PTHR18806 PTHR18806:SF4
NCBI CDD KOG2253; U1 snRNP complex, subunit SNU71 and related PWI-motif proteins
KEGG Orthology K12822; RBM25, RNA-binding protein 25
Gene Ontology GO:0003676; nucleic acid binding GO:0006397mRNA processing


Orthologs (automatic annotation)
TAIR AT1G60200 : splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os08g32100.1 : transposon protein, putative, CACTA, En/Spm sub-class, expressed
MaizeGDB (Corn) Zm00025a031037 , Zm00025a006098
Brachypodium KQJ98275
Barley HORVU7Hr1G063150.5 , HORVU7Hr1G063150.6 , HORVU7Hr1G063150.7 , HORVU7Hr1G063150.1 , HORVU7Hr1G063150.2 , HORVU7Hr1G063150.3 , HORVU7Hr1G063150.8 , HORVU7Hr1G063150.4 , HORVU7Hr1G063150.10
Wheat TraesCS7B02G199500 , TraesCS7A02G286900 , TraesCS7A02G286900 , TraesCS7B02G199500 , TraesCS7D02G283400 , TraesCS7D02G283400 , TraesCS7D02G283400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G192600 serine/threonine-protein kinase PRP4, putative, expressed K08827: serine/threonine-protein kinase PRP4
2 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
3 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
4 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
6 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.003G108700 RNA recognition motif, putative, expressed -
8 Sobic.001G347300 splicing factor, arginine/serine-rich 16, putative, expressed K13168: splicing factor, arginine/serine-rich 16
9 Sobic.001G241200 protein kinase domain containing protein, expressed -
10 Sobic.003G372700 expressed protein -
11 Sobic.008G054500 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.007G167500 expressed protein -
13 Sobic.009G138800 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
14 Sobic.007G117400 expressed protein -
15 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
16 Sobic.005G104500 phosphatidylinositol kinase, putative, expressed K00888: phosphatidylinositol 4-kinase A
17 Sobic.002G243900 - -
18 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
19 Sobic.002G191800 - -
20 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic007G126600 Sobic007G126600 Sobic008G192600 Sobic008G192600 Sobic007G126600--Sobic008G192600 Sobic003G119000 Sobic003G119000 Sobic007G126600--Sobic003G119000 Sobic002G404700 Sobic002G404700 Sobic007G126600--Sobic002G404700 Sobic007G065400 Sobic007G065400 Sobic007G126600--Sobic007G065400 Sobic009G026500 Sobic009G026500 Sobic007G126600--Sobic009G026500 Sobic002G006900 Sobic002G006900 Sobic007G126600--Sobic002G006900 Sobic003G108700 Sobic003G108700 Sobic007G126600--Sobic003G108700 Sobic001G347300 Sobic001G347300 Sobic007G126600--Sobic001G347300 Sobic001G241200 Sobic001G241200 Sobic007G126600--Sobic001G241200 Sobic008G192600--Sobic007G126600 Sobic008G192600--Sobic001G241200 Sobic008G192600--Sobic009G026500 Sobic008G192600--Sobic002G404700 Sobic008G192600--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic008G192600--Sobic003G372700 Sobic007G117400 Sobic007G117400 Sobic008G192600--Sobic007G117400 Sobic009G138800 Sobic009G138800 Sobic008G192600--Sobic009G138800 Sobic004G314000 Sobic004G314000 Sobic008G192600--Sobic004G314000 Sobic003G119000--Sobic003G372700 Sobic002G071500 Sobic002G071500 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic002G309600 Sobic002G309600 Sobic003G119000--Sobic002G309600 Sobic003G119000--Sobic001G241200 Sobic002G405800 Sobic002G405800 Sobic002G404700--Sobic002G405800 Sobic003G059750 Sobic003G059750 Sobic002G404700--Sobic003G059750 Sobic002G404700--Sobic002G309600 Sobic002G404700--Sobic007G126600 Sobic002G404700--Sobic004G314000 Sobic005G112300 Sobic005G112300 Sobic002G404700--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic002G404700--Sobic010G279450 Sobic002G404700--Sobic003G119000 Sobic002G404700--Sobic001G241200 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic009G040600 Sobic009G040600 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic001G365900 Sobic001G365900 Sobic009G026500--Sobic001G365900 Sobic009G026500--Sobic007G126600 Sobic009G026500--Sobic008G192600 Sobic001G214300 Sobic001G214300 Sobic009G026500--Sobic001G214300 Sobic010G153700 Sobic010G153700 Sobic009G026500--Sobic010G153700 Sobic009G026500--Sobic003G372700 Sobic001G290100 Sobic001G290100 Sobic009G026500--Sobic001G290100 Sobic009G026500--Sobic002G006900 Sobic002G008900 Sobic002G008900 Sobic009G026500--Sobic002G008900 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic002G248400 Sobic002G248400 Sobic003G108700--Sobic002G248400 Sobic002G157000 Sobic002G157000 Sobic003G108700--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic003G108700--Sobic003G268300 Sobic004G257400 Sobic004G257400 Sobic003G108700--Sobic004G257400 Sobic003G108700--Sobic007G126600 Sobic001G420200 Sobic001G420200 Sobic003G108700--Sobic001G420200 Sobic008G173900 Sobic008G173900 Sobic003G108700--Sobic008G173900 Sobic003G108700--Sobic003G200200 Sobic003G108700--Sobic007G167500 Sobic001G347300--Sobic007G126600 Sobic002G145101 Sobic002G145101 Sobic001G347300--Sobic002G145101 Sobic001G347300--Sobic007G065400 Sobic002G243900 Sobic002G243900 Sobic001G347300--Sobic002G243900 Sobic001G347300--Sobic003G108700 Sobic001G347300--Sobic001G511500 Sobic006G251900 Sobic006G251900 Sobic001G347300--Sobic006G251900 Sobic001G347300--Sobic003G200200 Sobic003G170100 Sobic003G170100 Sobic001G347300--Sobic003G170100 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic001G241200--Sobic005G008800 Sobic001G241200--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic001G241200--Sobic001G154900 Sobic001G241200--Sobic003G119000 Sobic001G540400 Sobic001G540400 Sobic001G241200--Sobic001G540400
Octagon: transcription factors


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