Gene annotation
Transcriptome id Sobic.002G396000.1
Synonym Sb02g041110
Functional annotation XPA-binding protein 2, putative, expressed
UniProt C5X3Z7
Pfam PF01535
Panther DB PTHR11246 PTHR11246:SF15
NCBI CDD -
KEGG Orthology K12867; SYF1, pre-mRNA-splicing factor SYF1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G28740 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g44970.1 : XPA-binding protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a047194 , Zm00025a015314 , Zm00025a048964
Brachypodium KQK14943
Barley HORVU2Hr1G025180.1 , HORVU2Hr1G025180.2
Wheat TraesCS2D02G145800 , TraesCS2A02G142400 , TraesCS2B02G167600 , TraesCS2B02G167600 , TraesCS2B02G167600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
2 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
3 Sobic.007G096000 expressed protein -
4 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
5 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
6 Sobic.009G210500 expressed protein -
7 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
8 Sobic.008G131000 domain of unknown function family protein, expressed -
9 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
10 Sobic.001G167200 DNA-directed polymerase, putative, expressed K03511: DNA polymerase kappa
11 Sobic.001G544200 endonuclease, putative, expressed K10848: ERCC4, DNA excision repair protein ERCC-4
12 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
13 Sobic.008G024600 expressed protein -
14 Sobic.006G209850 - -
15 Sobic.003G422300 recA protein, expressed K03553: recombination protein RecA
16 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
17 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
18 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
19 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
20 Sobic.001G094000 expressed protein -


Gene co-expression network
sample Sobic002G396000 Sobic002G396000 Sobic002G158700 Sobic002G158700 Sobic002G396000--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic002G396000--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic002G396000--Sobic007G096000 Sobic003G280800 Sobic003G280800 Sobic002G396000--Sobic003G280800 Sobic001G511500 Sobic001G511500 Sobic002G396000--Sobic001G511500 Sobic009G210500 Sobic009G210500 Sobic002G396000--Sobic009G210500 Sobic004G018300 Sobic004G018300 Sobic002G396000--Sobic004G018300 Sobic008G131000 Sobic008G131000 Sobic002G396000--Sobic008G131000 Sobic001G090400 Sobic001G090400 Sobic002G396000--Sobic001G090400 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic001G167200 Sobic001G167200 Sobic002G158700--Sobic001G167200 Sobic004G031700 Sobic004G031700 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G158700--Sobic002G396000 Sobic006G209850 Sobic006G209850 Sobic006G128900--Sobic006G209850 Sobic006G128900--Sobic001G511500 Sobic006G128900--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic006G128900--Sobic009G000500 Sobic006G128900--Sobic001G090400 Sobic006G128900--Sobic003G445400 Sobic003G268300 Sobic003G268300 Sobic006G128900--Sobic003G268300 Sobic001G477800 Sobic001G477800 Sobic006G128900--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic006G128900--Sobic002G157000 Sobic007G096000--Sobic003G280800 Sobic007G096000--Sobic003G445400 Sobic004G039700 Sobic004G039700 Sobic007G096000--Sobic004G039700 Sobic009G126400 Sobic009G126400 Sobic007G096000--Sobic009G126400 Sobic003G084900 Sobic003G084900 Sobic007G096000--Sobic003G084900 Sobic001G474600 Sobic001G474600 Sobic007G096000--Sobic001G474600 Sobic001G222500 Sobic001G222500 Sobic007G096000--Sobic001G222500 Sobic002G310200 Sobic002G310200 Sobic007G096000--Sobic002G310200 Sobic007G096000--Sobic009G000500 Sobic002G309600 Sobic002G309600 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic001G511500--Sobic004G031700 Sobic001G306900 Sobic001G306900 Sobic001G511500--Sobic001G306900 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic002G320500 Sobic002G320500 Sobic009G210500--Sobic002G320500 Sobic007G065400 Sobic007G065400 Sobic009G210500--Sobic007G065400 Sobic009G210500--Sobic002G157000 Sobic009G210500--Sobic006G032400 Sobic009G210500--Sobic003G268300 Sobic001G407200 Sobic001G407200 Sobic009G210500--Sobic001G407200 Sobic007G167500 Sobic007G167500 Sobic009G210500--Sobic007G167500 Sobic009G210500--Sobic001G090400 Sobic004G145500 Sobic004G145500 Sobic009G210500--Sobic004G145500 Sobic004G087600 Sobic004G087600 Sobic004G018300--Sobic004G087600 Sobic004G018300--Sobic001G167200 Sobic008G011100 Sobic008G011100 Sobic004G018300--Sobic008G011100 Sobic004G018300--Sobic002G158700 Sobic004G018300--Sobic002G396000 Sobic001G081000 Sobic001G081000 Sobic004G018300--Sobic001G081000 Sobic008G083000 Sobic008G083000 Sobic004G018300--Sobic008G083000 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic010G236400 Sobic010G236400 Sobic008G131000--Sobic010G236400 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic008G131000--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic008G131000--Sobic010G209400 Sobic003G401100 Sobic003G401100 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic003G187500 Sobic003G187500 Sobic008G131000--Sobic003G187500 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic006G173100 Sobic006G173100 Sobic001G090400--Sobic006G173100 Sobic004G057400 Sobic004G057400 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic001G090400--Sobic002G320500 Sobic001G090400--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic001G090400--Sobic002G157300 Sobic004G205600 Sobic004G205600 Sobic001G090400--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic001G090400--Sobic002G248400
Octagon: transcription factors


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