Gene annotation
Transcriptome id Sobic.001G167200.4,Sobic.001G167200.2,Sobic.001G167200.3,Sobic.001G167200.1
Synonym Sb01g014630
Functional annotation DNA-directed polymerase, putative, expressed
UniProt A0A1B6QJC6 , A0A1B6QJC9 , A0A1B6QJD4 , A0A1B6QJC5
Pfam PF11799 PF00817
Panther DB PTHR11076 PTHR11076:SF33
NCBI CDD -
KEGG Orthology K03511; DNA polymerase kappa
Gene Ontology GO:0006281; DNA repair GO:0003684damaged DNA binding


Orthologs (automatic annotation)
TAIR AT1G49980 : DNA/RNA polymerases superfamily protein
RAP-DB (Rice) LOC_Os03g42010.2,LOC_Os03g42010.1 : DNA-directed polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a017306 , Zm00025a018881
Brachypodium KQK14192 , KQK14193 , KQK14191
Barley HORVU4Hr1G013680.23 , HORVU4Hr1G013680.22 , HORVU4Hr1G013680.21 , HORVU4Hr1G013680.20 , HORVU4Hr1G013680.26 , HORVU4Hr1G013680.25 , HORVU4Hr1G013680.24 , HORVU4Hr1G013680.18 , HORVU4Hr1G013680.19 , HORVU4Hr1G013680.12 , HORVU4Hr1G013680.13 , HORVU4Hr1G013680.10 , HORVU4Hr1G013680.11 , HORVU4Hr1G013680.16 , HORVU4Hr1G013680.17 , HORVU4Hr1G013680.14 , HORVU4Hr1G013680.15 , HORVU4Hr1G013680.1 , HORVU4Hr1G013680.2 , HORVU4Hr1G013680.3 , HORVU4Hr1G013680.4 , HORVU4Hr1G013680.5 , HORVU4Hr1G013680.6 , HORVU4Hr1G013680.7 , HORVU4Hr1G013680.8 , HORVU4Hr1G013680.9
Wheat TraesCS4B02G080200 , TraesCS4D02G079100 , TraesCS4A02G234800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
2 Sobic.009G210500 expressed protein -
3 Sobic.004G018300 expressed protein K06970: 23S rRNA (adenine1618-N6)-methyltransferase
4 Sobic.005G015900 dnaJ domain containing protein, expressed -
5 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
6 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
7 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
8 Sobic.010G136600 - -
9 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
10 Sobic.002G396000 XPA-binding protein 2, putative, expressed K12867: SYF1, pre-mRNA-splicing factor SYF1
11 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
12 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
13 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
14 Sobic.006G032400 expressed protein -
15 Sobic.009G247400 PX domain containing protein, putative, expressed K17925: sorting nexin-13
16 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
17 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
18 Sobic.007G000800 expressed protein -
19 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
20 Sobic.002G053000 expressed protein -


Gene co-expression network
sample Sobic001G167200 Sobic001G167200 Sobic002G158700 Sobic002G158700 Sobic001G167200--Sobic002G158700 Sobic009G210500 Sobic009G210500 Sobic001G167200--Sobic009G210500 Sobic004G018300 Sobic004G018300 Sobic001G167200--Sobic004G018300 Sobic005G015900 Sobic005G015900 Sobic001G167200--Sobic005G015900 Sobic008G011100 Sobic008G011100 Sobic001G167200--Sobic008G011100 Sobic001G090400 Sobic001G090400 Sobic001G167200--Sobic001G090400 Sobic001G219600 Sobic001G219600 Sobic001G167200--Sobic001G219600 Sobic010G136600 Sobic010G136600 Sobic001G167200--Sobic010G136600 Sobic010G065300 Sobic010G065300 Sobic001G167200--Sobic010G065300 Sobic003G401000 Sobic003G401000 Sobic002G158700--Sobic003G401000 Sobic001G464200 Sobic001G464200 Sobic002G158700--Sobic001G464200 Sobic002G158700--Sobic001G167200 Sobic004G031700 Sobic004G031700 Sobic002G158700--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic002G158700--Sobic003G445400 Sobic007G000800 Sobic007G000800 Sobic002G158700--Sobic007G000800 Sobic007G061700 Sobic007G061700 Sobic002G158700--Sobic007G061700 Sobic008G149800 Sobic008G149800 Sobic002G158700--Sobic008G149800 Sobic002G396000 Sobic002G396000 Sobic002G158700--Sobic002G396000 Sobic002G320500 Sobic002G320500 Sobic009G210500--Sobic002G320500 Sobic007G065400 Sobic007G065400 Sobic009G210500--Sobic007G065400 Sobic002G157000 Sobic002G157000 Sobic009G210500--Sobic002G157000 Sobic006G032400 Sobic006G032400 Sobic009G210500--Sobic006G032400 Sobic003G268300 Sobic003G268300 Sobic009G210500--Sobic003G268300 Sobic001G407200 Sobic001G407200 Sobic009G210500--Sobic001G407200 Sobic007G167500 Sobic007G167500 Sobic009G210500--Sobic007G167500 Sobic009G210500--Sobic001G090400 Sobic004G145500 Sobic004G145500 Sobic009G210500--Sobic004G145500 Sobic004G087600 Sobic004G087600 Sobic004G018300--Sobic004G087600 Sobic004G018300--Sobic001G167200 Sobic004G018300--Sobic008G011100 Sobic004G018300--Sobic002G158700 Sobic004G018300--Sobic002G396000 Sobic001G081000 Sobic001G081000 Sobic004G018300--Sobic001G081000 Sobic008G083000 Sobic008G083000 Sobic004G018300--Sobic008G083000 Sobic009G126400 Sobic009G126400 Sobic004G018300--Sobic009G126400 Sobic004G223600 Sobic004G223600 Sobic004G018300--Sobic004G223600 Sobic005G015900--Sobic006G032400 Sobic005G015900--Sobic004G031700 Sobic004G219100 Sobic004G219100 Sobic005G015900--Sobic004G219100 Sobic001G176200 Sobic001G176200 Sobic005G015900--Sobic001G176200 Sobic005G015900--Sobic002G320500 Sobic005G015900--Sobic001G090400 Sobic005G015900--Sobic002G158700 Sobic001G303675 Sobic001G303675 Sobic005G015900--Sobic001G303675 Sobic005G015900--Sobic003G445400 Sobic008G011100--Sobic001G219600 Sobic004G039200 Sobic004G039200 Sobic008G011100--Sobic004G039200 Sobic008G011100--Sobic004G087600 Sobic002G031400 Sobic002G031400 Sobic008G011100--Sobic002G031400 Sobic009G260500 Sobic009G260500 Sobic008G011100--Sobic009G260500 Sobic008G011100--Sobic004G018300 Sobic008G011100--Sobic001G167200 Sobic009G065100 Sobic009G065100 Sobic008G011100--Sobic009G065100 Sobic001G311500 Sobic001G311500 Sobic008G011100--Sobic001G311500 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic006G173100 Sobic006G173100 Sobic001G090400--Sobic006G173100 Sobic004G057400 Sobic004G057400 Sobic001G090400--Sobic004G057400 Sobic001G090400--Sobic001G176200 Sobic001G090400--Sobic002G320500 Sobic009G000500 Sobic009G000500 Sobic001G090400--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic001G090400--Sobic002G157300 Sobic004G205600 Sobic004G205600 Sobic001G090400--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic001G090400--Sobic002G248400 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic010G139000 Sobic010G139000 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic007G096600 Sobic007G096600 Sobic010G136600--Sobic007G096600 Sobic010G136600--Sobic004G145500 Sobic002G144933 Sobic002G144933 Sobic010G136600--Sobic002G144933 Sobic008G173900 Sobic008G173900 Sobic010G136600--Sobic008G173900 Sobic008G028700 Sobic008G028700 Sobic010G136600--Sobic008G028700 Sobic010G136600--Sobic009G126400 Sobic010G277500 Sobic010G277500 Sobic010G136600--Sobic010G277500 Sobic010G136600--Sobic009G210500 Sobic004G009600 Sobic004G009600 Sobic010G136600--Sobic004G009600 Sobic010G001100 Sobic010G001100 Sobic010G065300--Sobic010G001100 Sobic008G009700 Sobic008G009700 Sobic010G065300--Sobic008G009700 Sobic002G153700 Sobic002G153700 Sobic010G065300--Sobic002G153700 Sobic001G306900 Sobic001G306900 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic003G293200 Sobic003G293200 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.