Gene annotation
Transcriptome id Sobic.006G102100.1
Synonym ATO, Sb06g018560
Functional annotation ZOS3-17 - C2H2 zinc finger protein, expressed
UniProt C5Y9P9
Pfam PF12108 PF16837 PF13297 PF11931
Panther DB PTHR12786 PTHR12786:SF2
NCBI CDD KOG2636; Splicing factor 3a, subunit 3
KEGG Orthology K12827; SF3A3, SAP61, splicing factor 3A subunit 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06160 : splicing factor-related
RAP-DB (Rice) LOC_Os03g50850.1 : ZOS3-17 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a028018 , Zm00025a049575
Brachypodium -
Barley HORVU3Hr1G063220.2 , HORVU3Hr1G063220.3 , HORVU3Hr1G063220.1 , HORVU3Hr1G063220.6 , HORVU3Hr1G063220.7 , HORVU3Hr1G063220.4 , HORVU3Hr1G063220.5
Wheat TraesCS3D02G266300 , TraesCS3D02G266300 , TraesCS3D02G266300 , TraesCS7A02G325300 , TraesCS7A02G325300 , TraesCS7B02G226000 , TraesCS3B02G299500 , TraesCS7D02G321900 , TraesCS3A02G266200 , TraesCS3A02G266200
Populus PNS23563 , PNS99913 , PNS99912 , PNS99911 , PNT08865


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G131000 domain of unknown function family protein, expressed -
2 Sobic.003G258900 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
3 Sobic.001G201400 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
4 Sobic.004G158700 copine, putative, expressed -
5 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
6 Sobic.003G187500 ATP-binding region, ATPase-like domain containing protein, expressed -
7 Sobic.006G049600 methyltransferase domain containing protein, expressed -
8 Sobic.001G081000 nucleotide-binding protein-like, putative, expressed K03593: mrp, ATP-binding protein involved in chromosome partitioning
9 Sobic.002G275600 RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed K10754: replication factor C subunit 1
10 Sobic.008G014500 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
12 Sobic.005G157100 THUMP domain-containing protein, putative, expressed K06963: TAN1, tRNA acetyltransferase TAN1
13 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
14 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
15 Sobic.002G310200 expressed protein -
16 Sobic.003G141500 CGMC_GSK.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
17 Sobic.008G011100 OsNucAP2 - Putative Nucleoporin Autopeptidase homologue, expressed -
18 Sobic.003G176600 expressed protein -
19 Sobic.007G220300 WD domain, G-beta repeat domain containing protein, expressed K11374: elongator complex protein 2
20 Sobic.001G542700 expressed protein -


Gene co-expression network
sample Sobic006G102100 Sobic006G102100 Sobic008G131000 Sobic008G131000 Sobic006G102100--Sobic008G131000 Sobic003G258900 Sobic003G258900 Sobic006G102100--Sobic003G258900 Sobic001G201400 Sobic001G201400 Sobic006G102100--Sobic001G201400 Sobic004G158700 Sobic004G158700 Sobic006G102100--Sobic004G158700 Sobic010G209400 Sobic010G209400 Sobic006G102100--Sobic010G209400 Sobic003G187500 Sobic003G187500 Sobic006G102100--Sobic003G187500 Sobic006G049600 Sobic006G049600 Sobic006G102100--Sobic006G049600 Sobic001G081000 Sobic001G081000 Sobic006G102100--Sobic001G081000 Sobic002G275600 Sobic002G275600 Sobic006G102100--Sobic002G275600 Sobic010G236400 Sobic010G236400 Sobic008G131000--Sobic010G236400 Sobic008G083000 Sobic008G083000 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic002G396000 Sobic002G396000 Sobic008G131000--Sobic002G396000 Sobic008G131000--Sobic010G209400 Sobic003G401100 Sobic003G401100 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic008G131000--Sobic003G187500 Sobic003G258900--Sobic002G396000 Sobic002G158700 Sobic002G158700 Sobic003G258900--Sobic002G158700 Sobic003G267800 Sobic003G267800 Sobic003G258900--Sobic003G267800 Sobic003G258900--Sobic006G102100 Sobic003G258900--Sobic001G081000 Sobic006G226300 Sobic006G226300 Sobic003G258900--Sobic006G226300 Sobic003G442000 Sobic003G442000 Sobic003G258900--Sobic003G442000 Sobic009G225200 Sobic009G225200 Sobic003G258900--Sobic009G225200 Sobic009G046700 Sobic009G046700 Sobic003G258900--Sobic009G046700 Sobic001G201500 Sobic001G201500 Sobic001G201400--Sobic001G201500 Sobic004G039600 Sobic004G039600 Sobic001G201400--Sobic004G039600 Sobic001G201400--Sobic003G187500 Sobic001G201400--Sobic008G131000 Sobic001G201400--Sobic003G401100 Sobic010G053800 Sobic010G053800 Sobic001G201400--Sobic010G053800 Sobic006G252700 Sobic006G252700 Sobic001G201400--Sobic006G252700 Sobic009G257800 Sobic009G257800 Sobic001G201400--Sobic009G257800 Sobic001G466700 Sobic001G466700 Sobic001G201400--Sobic001G466700 Sobic004G158700--Sobic003G187500 Sobic001G142100 Sobic001G142100 Sobic004G158700--Sobic001G142100 Sobic004G339100 Sobic004G339100 Sobic004G158700--Sobic004G339100 Sobic004G158700--Sobic001G201400 Sobic004G158700--Sobic006G102100 Sobic001G000200 Sobic001G000200 Sobic004G158700--Sobic001G000200 Sobic009G010600 Sobic009G010600 Sobic004G158700--Sobic009G010600 Sobic004G158700--Sobic008G131000 Sobic001G071400 Sobic001G071400 Sobic004G158700--Sobic001G071400 Sobic010G209400--Sobic010G236400 Sobic010G209400--Sobic004G084300 Sobic009G210500 Sobic009G210500 Sobic010G209400--Sobic009G210500 Sobic001G511500 Sobic001G511500 Sobic010G209400--Sobic001G511500 Sobic001G542700 Sobic001G542700 Sobic010G209400--Sobic001G542700 Sobic009G040600 Sobic009G040600 Sobic010G209400--Sobic009G040600 Sobic003G038500 Sobic003G038500 Sobic010G209400--Sobic003G038500 Sobic010G209400--Sobic008G131000 Sobic008G047800 Sobic008G047800 Sobic010G209400--Sobic008G047800 Sobic003G187500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic003G187500--Sobic004G072100 Sobic007G132100 Sobic007G132100 Sobic003G187500--Sobic007G132100 Sobic002G310200 Sobic002G310200 Sobic003G187500--Sobic002G310200 Sobic010G275500 Sobic010G275500 Sobic003G187500--Sobic010G275500 Sobic003G187500--Sobic008G047800 Sobic003G187500--Sobic004G039600 Sobic006G012500 Sobic006G012500 Sobic003G187500--Sobic006G012500 Sobic003G187500--Sobic010G236400 Sobic009G101200 Sobic009G101200 Sobic006G049600--Sobic009G101200 Sobic010G003400 Sobic010G003400 Sobic006G049600--Sobic010G003400 Sobic008G009600 Sobic008G009600 Sobic006G049600--Sobic008G009600 Sobic003G375200 Sobic003G375200 Sobic006G049600--Sobic003G375200 Sobic010G053600 Sobic010G053600 Sobic006G049600--Sobic010G053600 Sobic007G071900 Sobic007G071900 Sobic006G049600--Sobic007G071900 Sobic006G231800 Sobic006G231800 Sobic006G049600--Sobic006G231800 Sobic006G086600 Sobic006G086600 Sobic006G049600--Sobic006G086600 Sobic008G051200 Sobic008G051200 Sobic006G049600--Sobic008G051200 Sobic004G018300 Sobic004G018300 Sobic001G081000--Sobic004G018300 Sobic003G221600 Sobic003G221600 Sobic001G081000--Sobic003G221600 Sobic001G081000--Sobic008G131000 Sobic003G141500 Sobic003G141500 Sobic001G081000--Sobic003G141500 Sobic008G014500 Sobic008G014500 Sobic001G081000--Sobic008G014500 Sobic001G081000--Sobic003G258900 Sobic001G081000--Sobic008G083000 Sobic007G220300 Sobic007G220300 Sobic001G081000--Sobic007G220300 Sobic009G145101 Sobic009G145101 Sobic001G081000--Sobic009G145101 Sobic005G160100 Sobic005G160100 Sobic002G275600--Sobic005G160100 Sobic009G247400 Sobic009G247400 Sobic002G275600--Sobic009G247400 Sobic002G275600--Sobic008G014500 Sobic001G363500 Sobic001G363500 Sobic002G275600--Sobic001G363500 Sobic001G219600 Sobic001G219600 Sobic002G275600--Sobic001G219600 Sobic001G441400 Sobic001G441400 Sobic002G275600--Sobic001G441400 Sobic002G397500 Sobic002G397500 Sobic002G275600--Sobic002G397500 Sobic003G006400 Sobic003G006400 Sobic002G275600--Sobic003G006400 Sobic002G275600--Sobic010G209400
Octagon: transcription factors


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