Gene annotation
Transcriptome id Sobic.008G009600.2,Sobic.008G009600.1
Synonym HYL1, Sb08g000900, DRB1
Functional annotation double-stranded RNA binding motif containing protein, expressed
UniProt A0A1B6PAS0 , A0A1B6PAZ0
Pfam PF00035
Panther DB PTHR11207 PTHR11207:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003725; double-stranded RNA binding


Orthologs (automatic annotation)
TAIR AT1G09700 : dsRNA-binding domain-like superfamily protein
RAP-DB (Rice) LOC_Os12g01916.1 : double-stranded RNA binding motif containing protein, expressed
MaizeGDB (Corn) Zm00025a013194
Brachypodium KQJ92596
Barley HORVU4Hr1G024480.2 , HORVU4Hr1G024480.3 , HORVU5Hr1G047100.5 , HORVU5Hr1G047100.6 , HORVU5Hr1G047100.2 , HORVU5Hr1G047100.1
Wheat TraesCS5D02G143500 , TraesCS5D02G143500 , TraesCS5A02G149400 , TraesCS5A02G149400 , TraesCS5B02G148100 , TraesCS5B02G148100
Populus -


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cDNA sequences
Sobic.008G009600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G049600 methyltransferase domain containing protein, expressed -
2 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
3 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
4 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
5 Sobic.010G073200 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
6 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
7 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
8 Sobic.009G101200 expressed protein K17973: NAA25, N-terminal acetyltransferase B complex non-catalytic subunit
9 Sobic.006G226300 SDA1, putative, expressed K14856: SDA1, protein SDA1
10 Sobic.009G046700 ranBP1 domain containing protein, expressed K15304: Ran-binding protein 3
11 Sobic.002G405500 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11841: USP10, ubiquitin carboxyl-terminal hydrolase 10
12 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
13 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
14 Sobic.002G412700 histone-arginine methyltransferase CARM1, putative, expressed K05931: CARM1, type I protein arginine methyltransferase
15 Sobic.006G102100 ZOS3-17 - C2H2 zinc finger protein, expressed K12827: SF3A3, SAP61, splicing factor 3A subunit 3
16 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
17 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
18 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
19 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
20 Sobic.001G126600 BRCA1 C Terminus domain containing protein, expressed K14843: PES1, pescadillo


Gene co-expression network
sample Sobic008G009600 Sobic008G009600 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic004G011000 Sobic004G011000 Sobic008G009600--Sobic004G011000 Sobic001G017700 Sobic001G017700 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic010G073200 Sobic010G073200 Sobic008G009600--Sobic010G073200 Sobic003G407600 Sobic003G407600 Sobic008G009600--Sobic003G407600 Sobic001G145400 Sobic001G145400 Sobic008G009600--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic008G009600--Sobic009G101200 Sobic006G226300 Sobic006G226300 Sobic008G009600--Sobic006G226300 Sobic006G049600--Sobic009G101200 Sobic010G003400 Sobic010G003400 Sobic006G049600--Sobic010G003400 Sobic006G049600--Sobic008G009600 Sobic003G375200 Sobic003G375200 Sobic006G049600--Sobic003G375200 Sobic010G053600 Sobic010G053600 Sobic006G049600--Sobic010G053600 Sobic007G071900 Sobic007G071900 Sobic006G049600--Sobic007G071900 Sobic006G231800 Sobic006G231800 Sobic006G049600--Sobic006G231800 Sobic006G086600 Sobic006G086600 Sobic006G049600--Sobic006G086600 Sobic008G051200 Sobic008G051200 Sobic006G049600--Sobic008G051200 Sobic004G011000--Sobic008G009600 Sobic009G040500 Sobic009G040500 Sobic004G011000--Sobic009G040500 Sobic003G115100 Sobic003G115100 Sobic004G011000--Sobic003G115100 Sobic009G046700 Sobic009G046700 Sobic004G011000--Sobic009G046700 Sobic010G251100 Sobic010G251100 Sobic004G011000--Sobic010G251100 Sobic001G010600 Sobic001G010600 Sobic004G011000--Sobic001G010600 Sobic001G370300 Sobic001G370300 Sobic004G011000--Sobic001G370300 Sobic010G247400 Sobic010G247400 Sobic004G011000--Sobic010G247400 Sobic009G193850 Sobic009G193850 Sobic004G011000--Sobic009G193850 Sobic001G017700--Sobic001G145400 Sobic006G208500 Sobic006G208500 Sobic001G017700--Sobic006G208500 Sobic001G017700--Sobic006G086600 Sobic006G136400 Sobic006G136400 Sobic001G017700--Sobic006G136400 Sobic003G057700 Sobic003G057700 Sobic001G017700--Sobic003G057700 Sobic003G287100 Sobic003G287100 Sobic001G017700--Sobic003G287100 Sobic001G017700--Sobic008G009600 Sobic001G017700--Sobic009G101200 Sobic003G300300 Sobic003G300300 Sobic001G017700--Sobic003G300300 Sobic005G004200 Sobic005G004200 Sobic001G142100--Sobic005G004200 Sobic008G131000 Sobic008G131000 Sobic001G142100--Sobic008G131000 Sobic003G187500 Sobic003G187500 Sobic001G142100--Sobic003G187500 Sobic005G216300 Sobic005G216300 Sobic001G142100--Sobic005G216300 Sobic003G401100 Sobic003G401100 Sobic001G142100--Sobic003G401100 Sobic006G252700 Sobic006G252700 Sobic001G142100--Sobic006G252700 Sobic003G439800 Sobic003G439800 Sobic001G142100--Sobic003G439800 Sobic006G114500 Sobic006G114500 Sobic001G142100--Sobic006G114500 Sobic003G114700 Sobic003G114700 Sobic001G142100--Sobic003G114700 Sobic010G073200--Sobic008G009600 Sobic003G258900 Sobic003G258900 Sobic010G073200--Sobic003G258900 Sobic001G126600 Sobic001G126600 Sobic010G073200--Sobic001G126600 Sobic010G073200--Sobic009G046700 Sobic001G177100 Sobic001G177100 Sobic010G073200--Sobic001G177100 Sobic010G073200--Sobic009G040500 Sobic010G073200--Sobic003G407600 Sobic001G507900 Sobic001G507900 Sobic010G073200--Sobic001G507900 Sobic010G073200--Sobic006G226300 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic009G101200--Sobic006G086600 Sobic009G101200--Sobic010G003400 Sobic009G101200--Sobic001G145400 Sobic001G259000 Sobic001G259000 Sobic009G101200--Sobic001G259000 Sobic009G101200--Sobic004G085000 Sobic001G052400 Sobic001G052400 Sobic009G101200--Sobic001G052400 Sobic009G246500 Sobic009G246500 Sobic009G101200--Sobic009G246500 Sobic001G429600 Sobic001G429600 Sobic009G101200--Sobic001G429600 Sobic009G101200--Sobic006G049600 Sobic002G142600 Sobic002G142600 Sobic006G226300--Sobic002G142600 Sobic001G346900 Sobic001G346900 Sobic006G226300--Sobic001G346900 Sobic005G157100 Sobic005G157100 Sobic006G226300--Sobic005G157100 Sobic003G042400 Sobic003G042400 Sobic006G226300--Sobic003G042400 Sobic004G285000 Sobic004G285000 Sobic006G226300--Sobic004G285000 Sobic008G147200 Sobic008G147200 Sobic006G226300--Sobic008G147200 Sobic005G137700 Sobic005G137700 Sobic006G226300--Sobic005G137700 Sobic006G226300--Sobic003G258900 Sobic001G246500 Sobic001G246500 Sobic006G226300--Sobic001G246500
Octagon: transcription factors


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