Gene annotation
Transcriptome id Sobic.001G126600.1
Synonym Sb01g011100
Functional annotation BRCA1 C Terminus domain containing protein, expressed
UniProt C5WNV4
Pfam PF16589 PF06732
Panther DB PTHR12221 PTHR12221:SF6
NCBI CDD -
KEGG Orthology K14843; PES1, pescadillo
Gene Ontology GO:0005730; nucleolus


Orthologs (automatic annotation)
TAIR AT5G14520 : pescadillo-related
RAP-DB (Rice) LOC_Os03g49210.1 : BRCA1 C Terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007713 , Zm00025a007711
Brachypodium KQK13668
Barley HORVU4Hr1G005900.1 , HORVU4Hr1G005900.2 , HORVU4Hr1G005900.3 , HORVU4Hr1G005900.4 , HORVU4Hr1G005900.5
Wheat TraesCS4D02G034600 , TraesCS4A02G276400 , TraesCS4B02G037300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G073200 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
2 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
3 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
4 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
5 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
6 Sobic.001G091900 WD domain, G-beta repeat domain containing protein, expressed K15443: TRM82, tRNA (guanine-N(7)-)-methyltransferase subunit TRM82
7 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
8 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
9 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
10 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
11 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
12 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
13 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
14 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
15 Sobic.001G177100 GTPase of unknown function domain containing protein, putative, expressed K14538: NUG1, nuclear GTP-binding protein
16 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
17 Sobic.006G043700 3-oxoacyl-reductase, chloroplast precursor, putative, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
18 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
19 Sobic.006G049600 methyltransferase domain containing protein, expressed -
20 Sobic.003G407800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58


Gene co-expression network
sample Sobic001G126600 Sobic001G126600 Sobic010G073200 Sobic010G073200 Sobic001G126600--Sobic010G073200 Sobic008G009600 Sobic008G009600 Sobic001G126600--Sobic008G009600 Sobic004G326600 Sobic004G326600 Sobic001G126600--Sobic004G326600 Sobic001G401400 Sobic001G401400 Sobic001G126600--Sobic001G401400 Sobic002G014400 Sobic002G014400 Sobic001G126600--Sobic002G014400 Sobic001G091900 Sobic001G091900 Sobic001G126600--Sobic001G091900 Sobic006G198600 Sobic006G198600 Sobic001G126600--Sobic006G198600 Sobic003G407600 Sobic003G407600 Sobic001G126600--Sobic003G407600 Sobic003G123200 Sobic003G123200 Sobic001G126600--Sobic003G123200 Sobic010G073200--Sobic008G009600 Sobic003G258900 Sobic003G258900 Sobic010G073200--Sobic003G258900 Sobic010G073200--Sobic001G126600 Sobic009G046700 Sobic009G046700 Sobic010G073200--Sobic009G046700 Sobic001G177100 Sobic001G177100 Sobic010G073200--Sobic001G177100 Sobic009G040500 Sobic009G040500 Sobic010G073200--Sobic009G040500 Sobic010G073200--Sobic003G407600 Sobic001G507900 Sobic001G507900 Sobic010G073200--Sobic001G507900 Sobic006G226300 Sobic006G226300 Sobic010G073200--Sobic006G226300 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic004G011000 Sobic004G011000 Sobic008G009600--Sobic004G011000 Sobic001G017700 Sobic001G017700 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic008G009600--Sobic010G073200 Sobic008G009600--Sobic003G407600 Sobic001G145400 Sobic001G145400 Sobic008G009600--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic008G009600--Sobic009G101200 Sobic008G009600--Sobic006G226300 Sobic004G047200 Sobic004G047200 Sobic004G326600--Sobic004G047200 Sobic004G326600--Sobic002G014400 Sobic002G423500 Sobic002G423500 Sobic004G326600--Sobic002G423500 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic002G341800 Sobic002G341800 Sobic004G326600--Sobic002G341800 Sobic005G163700 Sobic005G163700 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic001G401400--Sobic003G407600 Sobic002G014400--Sobic004G047200 Sobic002G014400--Sobic004G326600 Sobic002G014400--Sobic002G423500 Sobic002G014400--Sobic005G163700 Sobic002G014400--Sobic002G341800 Sobic001G460500 Sobic001G460500 Sobic002G014400--Sobic001G460500 Sobic002G394600 Sobic002G394600 Sobic002G014400--Sobic002G394600 Sobic006G044600 Sobic006G044600 Sobic002G014400--Sobic006G044600 Sobic001G251600 Sobic001G251600 Sobic002G014400--Sobic001G251600 Sobic001G091900--Sobic004G326600 Sobic003G160900 Sobic003G160900 Sobic001G091900--Sobic003G160900 Sobic009G190300 Sobic009G190300 Sobic001G091900--Sobic009G190300 Sobic006G056600 Sobic006G056600 Sobic001G091900--Sobic006G056600 Sobic001G481700 Sobic001G481700 Sobic001G091900--Sobic001G481700 Sobic009G211700 Sobic009G211700 Sobic001G091900--Sobic009G211700 Sobic001G091900--Sobic002G341800 Sobic001G091900--Sobic002G143000 Sobic001G091900--Sobic001G458700 Sobic006G198600--Sobic003G123200 Sobic009G071700 Sobic009G071700 Sobic006G198600--Sobic009G071700 Sobic006G198600--Sobic001G401400 Sobic008G163500 Sobic008G163500 Sobic006G198600--Sobic008G163500 Sobic006G251600 Sobic006G251600 Sobic006G198600--Sobic006G251600 Sobic008G049100 Sobic008G049100 Sobic006G198600--Sobic008G049100 Sobic003G425100 Sobic003G425100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic001G157300 Sobic001G157300 Sobic006G198600--Sobic001G157300 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic010G224700 Sobic010G224700 Sobic003G123200--Sobic010G224700
Octagon: transcription factors


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