Gene annotation
Transcriptome id Sobic.001G401400.1
Synonym Sb01g037980
Functional annotation NUC189 domain containing protein, expressed
UniProt C5WNE4
Pfam PF00400 PF04003
Panther DB PTHR22847
NCBI CDD KOG4547; WD40 repeat-containing protein
KEGG Orthology K14546; UTP5, U3 small nucleolar RNA-associated protein 5
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G11240 : transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os03g18840.1 : NUC189 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002071 , Zm00025a052613
Brachypodium PNT77554 , KQK22067
Barley HORVU4Hr1G054880.7 , HORVU4Hr1G054880.6 , HORVU4Hr1G054880.2 , HORVU4Hr1G054880.1 , HORVU4Hr1G054880.14 , HORVU4Hr1G054880.13
Wheat TraesCS4D02G189300 , TraesCS4A02G116300 , TraesCS4A02G116300 , TraesCS2D02G317700 , TraesCS4B02G187900 , TraesCS1B02G115500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
2 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
3 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
4 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
5 Sobic.003G407800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
6 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
7 Sobic.006G225400 zinc finger protein, putative, expressed -
8 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
9 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
10 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
11 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
12 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
13 Sobic.001G126600 BRCA1 C Terminus domain containing protein, expressed K14843: PES1, pescadillo
14 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
15 Sobic.003G299200 pentatricopeptide, putative, expressed -
16 Sobic.007G185600 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
17 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
18 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
19 Sobic.002G183300 GTP binding protein, putative, expressed -
20 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -


Gene co-expression network
sample Sobic001G401400 Sobic001G401400 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic006G198600 Sobic006G198600 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic004G036700--Sobic005G028100 Sobic004G036700--Sobic001G401400 Sobic004G036700--Sobic001G422500 Sobic004G036700--Sobic006G225400 Sobic008G163500 Sobic008G163500 Sobic004G036700--Sobic008G163500 Sobic003G123200 Sobic003G123200 Sobic004G036700--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic004G036700--Sobic003G425100 Sobic004G036700--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic004G036700--Sobic010G205900 Sobic006G198600--Sobic003G123200 Sobic009G071700 Sobic009G071700 Sobic006G198600--Sobic009G071700 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G251600 Sobic006G251600 Sobic006G198600--Sobic006G251600 Sobic008G049100 Sobic008G049100 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic001G157300 Sobic001G157300 Sobic006G198600--Sobic001G157300 Sobic005G028100--Sobic004G036700 Sobic005G028100--Sobic008G163500 Sobic005G028100--Sobic006G225400 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic003G432300 Sobic003G432300 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic003G322200--Sobic001G372800 Sobic003G322200--Sobic001G401400 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic010G038800 Sobic010G038800 Sobic003G322200--Sobic010G038800 Sobic003G322200--Sobic006G198600 Sobic003G336500 Sobic003G336500 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic001G483800 Sobic001G483800 Sobic003G322200--Sobic001G483800 Sobic003G407800--Sobic001G401400 Sobic003G407800--Sobic006G251600 Sobic004G326600 Sobic004G326600 Sobic003G407800--Sobic004G326600 Sobic003G407800--Sobic001G372800 Sobic001G371100 Sobic001G371100 Sobic003G407800--Sobic001G371100 Sobic008G083400 Sobic008G083400 Sobic003G407800--Sobic008G083400 Sobic003G407800--Sobic003G407600 Sobic003G407800--Sobic004G036700 Sobic003G407800--Sobic005G028100 Sobic001G372800--Sobic001G483800 Sobic002G268100 Sobic002G268100 Sobic001G372800--Sobic002G268100 Sobic001G372800--Sobic003G322200 Sobic009G010300 Sobic009G010300 Sobic001G372800--Sobic009G010300 Sobic009G191500 Sobic009G191500 Sobic001G372800--Sobic009G191500 Sobic001G372800--Sobic001G401400 Sobic001G372800--Sobic010G038800 Sobic001G372800--Sobic005G028100 Sobic001G372800--Sobic003G432300 Sobic006G225400--Sobic005G028100 Sobic006G225400--Sobic006G251600 Sobic006G225400--Sobic004G036700 Sobic006G225400--Sobic003G425100 Sobic006G225400--Sobic009G071700 Sobic006G225400--Sobic010G205900 Sobic006G225400--Sobic003G123200 Sobic006G225400--Sobic001G401400 Sobic006G225400--Sobic006G198600 Sobic001G422500--Sobic004G036700 Sobic001G422500--Sobic008G163500 Sobic002G378100 Sobic002G378100 Sobic001G422500--Sobic002G378100 Sobic006G231800 Sobic006G231800 Sobic001G422500--Sobic006G231800 Sobic010G083900 Sobic010G083900 Sobic001G422500--Sobic010G083900 Sobic002G262100 Sobic002G262100 Sobic001G422500--Sobic002G262100 Sobic009G101200 Sobic009G101200 Sobic001G422500--Sobic009G101200 Sobic001G422500--Sobic006G198600 Sobic001G422500--Sobic003G123200 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.