Gene annotation
Transcriptome id Sobic.003G322200.1
Synonym Sb03g036880, PPR336
Functional annotation membrane-associated salt-inducible protein, putative, expressed
UniProt C5XMD0
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF621
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G61870 : pentatricopeptide repeat 336
RAP-DB (Rice) LOC_Os01g58080.1 : membrane-associated salt-inducible protein, putative, expressed
MaizeGDB (Corn) Zm00025a027235
Brachypodium KQK10141 , KQK10140 , KQK10139 , PNT73024
Barley HORVU5Hr1G041750.1 , HORVU5Hr1G041750.2 , HORVU5Hr1G041750.3 , HORVU3Hr1G077780.1 , HORVU3Hr1G077780.2 , HORVU3Hr1G077780.3
Wheat -
Populus -


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cDNA sequences
Sobic.003G322200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
2 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
3 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
4 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
5 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
6 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
7 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
8 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
9 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
10 Sobic.010G091500 pentatricopeptide, putative, expressed -
11 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
12 Sobic.002G268100 - K16911: ATP-dependent RNA helicase DDX21
13 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
14 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
15 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
17 Sobic.001G049800 DDT domain containing protein, putative, expressed -
18 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
19 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
20 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)


Gene co-expression network
sample Sobic003G322200 Sobic003G322200 Sobic001G372800 Sobic001G372800 Sobic003G322200--Sobic001G372800 Sobic001G401400 Sobic001G401400 Sobic003G322200--Sobic001G401400 Sobic003G123200 Sobic003G123200 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic010G038800 Sobic010G038800 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G336500 Sobic003G336500 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic001G483800 Sobic001G483800 Sobic003G322200--Sobic001G483800 Sobic001G372800--Sobic001G483800 Sobic002G268100 Sobic002G268100 Sobic001G372800--Sobic002G268100 Sobic001G372800--Sobic003G322200 Sobic009G010300 Sobic009G010300 Sobic001G372800--Sobic009G010300 Sobic009G191500 Sobic009G191500 Sobic001G372800--Sobic009G191500 Sobic001G372800--Sobic001G401400 Sobic001G372800--Sobic010G038800 Sobic005G028100 Sobic005G028100 Sobic001G372800--Sobic005G028100 Sobic003G432300 Sobic003G432300 Sobic001G372800--Sobic003G432300 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic001G401400--Sobic006G198600 Sobic001G401400--Sobic005G028100 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic005G098800 Sobic005G098800 Sobic003G123200--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic003G123200--Sobic008G163500 Sobic010G205900 Sobic010G205900 Sobic003G123200--Sobic010G205900 Sobic009G246500 Sobic009G246500 Sobic003G123200--Sobic009G246500 Sobic008G049100 Sobic008G049100 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic010G224700 Sobic010G224700 Sobic003G123200--Sobic010G224700 Sobic001G024000 Sobic001G024000 Sobic003G412000--Sobic001G024000 Sobic003G412000--Sobic003G322200 Sobic005G098000 Sobic005G098000 Sobic003G412000--Sobic005G098000 Sobic008G068100 Sobic008G068100 Sobic003G412000--Sobic008G068100 Sobic008G111600 Sobic008G111600 Sobic003G412000--Sobic008G111600 Sobic002G112600 Sobic002G112600 Sobic003G412000--Sobic002G112600 Sobic003G412000--Sobic010G038800 Sobic003G412000--Sobic001G483800 Sobic009G154900 Sobic009G154900 Sobic003G412000--Sobic009G154900 Sobic004G215900 Sobic004G215900 Sobic010G038800--Sobic004G215900 Sobic003G144000 Sobic003G144000 Sobic010G038800--Sobic003G144000 Sobic010G038800--Sobic009G191500 Sobic010G153300 Sobic010G153300 Sobic010G038800--Sobic010G153300 Sobic001G408300 Sobic001G408300 Sobic010G038800--Sobic001G408300 Sobic010G038800--Sobic001G372800 Sobic010G038800--Sobic003G322200 Sobic010G038800--Sobic003G123200 Sobic010G038800--Sobic008G068100 Sobic006G198600--Sobic003G123200 Sobic009G071700 Sobic009G071700 Sobic006G198600--Sobic009G071700 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G251600 Sobic006G251600 Sobic006G198600--Sobic006G251600 Sobic006G198600--Sobic008G049100 Sobic003G425100 Sobic003G425100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic001G157300 Sobic001G157300 Sobic006G198600--Sobic001G157300 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic003G336500--Sobic009G191500 Sobic007G060600 Sobic007G060600 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic003G336500--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic002G344500--Sobic003G322200 Sobic001G322600 Sobic001G322600 Sobic002G344500--Sobic001G322600 Sobic008G056900 Sobic008G056900 Sobic002G344500--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic002G344500--Sobic009G096100 Sobic002G344500--Sobic003G407600 Sobic006G226300 Sobic006G226300 Sobic002G344500--Sobic006G226300 Sobic002G344500--Sobic004G036700 Sobic002G344500--Sobic001G422500 Sobic008G152300 Sobic008G152300 Sobic002G344500--Sobic008G152300 Sobic001G483800--Sobic001G372800 Sobic001G483800--Sobic009G191500 Sobic001G483800--Sobic008G068100 Sobic001G483800--Sobic002G268100 Sobic001G483800--Sobic009G010300 Sobic001G483800--Sobic003G336500 Sobic001G483800--Sobic005G028100 Sobic001G483800--Sobic005G088900 Sobic001G483800--Sobic003G322200
Octagon: transcription factors


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