Gene annotation
Transcriptome id Sobic.001G049800.2,Sobic.001G049800.1
Synonym
Functional annotation DDT domain containing protein, putative, expressed
UniProt C5WWZ8 , C5WW77
Pfam PF02791 PF15614 PF02791 PF15614 PF00046
Panther DB PTHR10390 PTHR10390:SF38
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G12750 : Homeodomain-like transcriptional regulator
RAP-DB (Rice) LOC_Os07g42750.1 : DDT domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008628
Brachypodium KQJ86104 , KQJ86103 , KQJ86102 , KQJ86101 , PNT62438 , PNT62437 , PNT62436
Barley HORVU3Hr1G020400.11 , HORVU3Hr1G020400.10 , HORVU2Hr1G021950.16 , HORVU2Hr1G021950.14 , HORVU2Hr1G021950.13 , HORVU2Hr1G021950.12 , HORVU2Hr1G021950.11 , HORVU2Hr1G021950.10 , HORVU3Hr1G020400.7 , HORVU3Hr1G020400.6 , HORVU3Hr1G020400.5 , HORVU3Hr1G020400.3 , HORVU3Hr1G020400.2 , HORVU3Hr1G020400.1 , HORVU3Hr1G020400.9 , HORVU3Hr1G020400.8 , HORVU2Hr1G021950.9 , HORVU2Hr1G021950.8 , HORVU2Hr1G021950.7 , HORVU2Hr1G021950.6 , HORVU2Hr1G021950.5 , HORVU2Hr1G021950.4 , HORVU2Hr1G021950.3 , HORVU2Hr1G021950.2 , HORVU2Hr1G021950.1 , HORVU2Hr1G021950.15
Wheat TraesCS2A02G124800 , TraesCS2D02G127700 , TraesCS3A02G112300 , TraesCS3A02G112300 , TraesCS3A02G112300 , TraesCS3B02G131700 , TraesCS3B02G131700 , TraesCS3B02G131700 , TraesCS3B02G131700 , TraesCS3B02G131700 , TraesCS3B02G131700 , TraesCS3B02G131700 , TraesCS3B02G131700 , TraesCS3D02G114300 , TraesCS3D02G114300 , TraesCS3D02G114300 , TraesCS3B02G131700 , TraesCS2B02G147300 , TraesCS2B02G147300 , TraesCS2B02G147300 , TraesCS2B02G147300 , TraesCS2B02G147300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
2 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
3 Sobic.004G027300 expressed protein -
4 Sobic.001G544300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed -
5 Sobic.010G224700 - K17680: twinkle protein
6 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
7 Sobic.006G059500 expressed protein K13150: COIL, coilin
8 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
9 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
10 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
11 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
12 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
13 Sobic.001G453500 expressed protein -
14 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.006G273900 expressed protein -
16 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
17 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
18 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
19 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
20 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2


Gene co-expression network
sample Sobic001G049800 Sobic001G049800 Sobic007G060600 Sobic007G060600 Sobic001G049800--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic001G049800--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic006G111200 Sobic006G111200 Sobic001G049800--Sobic006G111200 Sobic006G059500 Sobic006G059500 Sobic001G049800--Sobic006G059500 Sobic002G378100 Sobic002G378100 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic007G060600--Sobic001G049800 Sobic001G040600 Sobic001G040600 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic007G060600--Sobic004G151000 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic004G151000--Sobic006G111200 Sobic004G151000--Sobic002G378100 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic001G453500 Sobic001G453500 Sobic004G151000--Sobic001G453500 Sobic004G151000--Sobic006G059500 Sobic004G151000--Sobic007G059700 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic003G425100 Sobic003G425100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic004G027300--Sobic002G112600 Sobic001G544300--Sobic001G049800 Sobic001G544300--Sobic002G378100 Sobic001G544300--Sobic004G151000 Sobic003G123200 Sobic003G123200 Sobic001G544300--Sobic003G123200 Sobic001G544300--Sobic010G224700 Sobic001G544300--Sobic007G060600 Sobic008G049100 Sobic008G049100 Sobic001G544300--Sobic008G049100 Sobic003G199300 Sobic003G199300 Sobic001G544300--Sobic003G199300 Sobic001G544300--Sobic010G083900 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic010G224700--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic010G224700--Sobic003G425100 Sobic010G224700--Sobic003G199300 Sobic006G111200--Sobic001G453500 Sobic006G111200--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G111200--Sobic001G368300 Sobic006G111200--Sobic007G060600 Sobic006G111200--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G111200--Sobic006G059500 Sobic006G111200--Sobic007G059700 Sobic006G059500--Sobic004G151000 Sobic006G059500--Sobic001G049800 Sobic002G132600 Sobic002G132600 Sobic006G059500--Sobic002G132600 Sobic006G059500--Sobic006G111200 Sobic004G215900 Sobic004G215900 Sobic006G059500--Sobic004G215900 Sobic006G059500--Sobic007G060600 Sobic006G140400 Sobic006G140400 Sobic006G059500--Sobic006G140400 Sobic006G059500--Sobic001G453500 Sobic009G142000 Sobic009G142000 Sobic006G059500--Sobic009G142000 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic010G083900--Sobic002G378100 Sobic001G322600 Sobic001G322600 Sobic010G083900--Sobic001G322600 Sobic010G083900--Sobic001G049800 Sobic010G083900--Sobic001G422500 Sobic010G083900--Sobic010G224700 Sobic010G083900--Sobic004G151000 Sobic003G014700 Sobic003G014700 Sobic010G083900--Sobic003G014700 Sobic005G028300 Sobic005G028300 Sobic010G083900--Sobic005G028300 Sobic010G083900--Sobic001G119600
Octagon: transcription factors


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