Gene annotation
Transcriptome id Sobic.007G059700.7,Sobic.007G059700.5,Sobic.007G059700.6,Sobic.007G059700.4
Synonym Sb07g004760
Functional annotation CRS2-associated factor 2, mitochondrial precursor, putative, expressed
UniProt A0A1B6PFV4
Pfam PF01985
Panther DB PTHR31846 PTHR31846:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT4G31010 : RNA-binding CRS1 / YhbY (CRM) domain-containing protein
RAP-DB (Rice) LOC_Os08g07790.1 : CRS2-associated factor 2, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a055014
Brachypodium KQJ95192 , KQJ95193
Barley HORVU3Hr1G019770.1 , HORVU3Hr1G019770.3 , HORVU3Hr1G019770.2 , HORVU3Hr1G019770.5 , HORVU3Hr1G019770.4 , HORVU3Hr1G019770.7 , HORVU3Hr1G019770.6
Wheat TraesCS3A02G108800 , TraesCS3D02G110600 , TraesCS3B02G127800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G273900 expressed protein -
2 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
3 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
4 Sobic.001G049800 DDT domain containing protein, putative, expressed -
5 Sobic.004G027300 expressed protein -
6 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
7 Sobic.001G453500 expressed protein -
8 Sobic.010G097500 DNA polymerase lambda, putative, expressed K03512: DNA polymerase lambda
9 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
10 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
11 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
12 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
13 Sobic.003G436600 expressed protein -
14 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
15 Sobic.002G112600 zinc finger family protein, putative, expressed -
16 Sobic.010G153300 protein phosphatase 2C, putative, expressed K17679: ATP-dependent RNA helicase MSS116, mitochondrial
17 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
18 Sobic.010G224700 - K17680: twinkle protein
19 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
20 Sobic.001G008000 PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G059700 Sobic007G059700 Sobic006G273900 Sobic006G273900 Sobic007G059700--Sobic006G273900 Sobic007G060600 Sobic007G060600 Sobic007G059700--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic007G059700--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic007G059700--Sobic001G049800 Sobic004G027300 Sobic004G027300 Sobic007G059700--Sobic004G027300 Sobic009G191500 Sobic009G191500 Sobic007G059700--Sobic009G191500 Sobic001G453500 Sobic001G453500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic006G111200 Sobic006G111200 Sobic007G059700--Sobic006G111200 Sobic006G273900--Sobic007G059700 Sobic006G273900--Sobic007G060600 Sobic006G273900--Sobic001G049800 Sobic006G273900--Sobic004G151000 Sobic001G368300 Sobic001G368300 Sobic006G273900--Sobic001G368300 Sobic006G273900--Sobic004G027300 Sobic006G273900--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic006G273900--Sobic004G215900 Sobic006G273900--Sobic006G111200 Sobic007G060600--Sobic001G049800 Sobic001G040600 Sobic001G040600 Sobic007G060600--Sobic001G040600 Sobic007G060600--Sobic007G059700 Sobic007G060600--Sobic004G151000 Sobic007G060600--Sobic004G027300 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic007G060600--Sobic006G111200 Sobic007G060600--Sobic009G191500 Sobic004G151000--Sobic001G049800 Sobic004G151000--Sobic004G027300 Sobic004G151000--Sobic006G111200 Sobic002G378100 Sobic002G378100 Sobic004G151000--Sobic002G378100 Sobic004G151000--Sobic007G060600 Sobic002G112600 Sobic002G112600 Sobic004G151000--Sobic002G112600 Sobic004G151000--Sobic001G453500 Sobic006G059500 Sobic006G059500 Sobic004G151000--Sobic006G059500 Sobic004G151000--Sobic007G059700 Sobic001G049800--Sobic007G060600 Sobic001G049800--Sobic004G151000 Sobic001G049800--Sobic004G027300 Sobic001G544300 Sobic001G544300 Sobic001G049800--Sobic001G544300 Sobic010G224700 Sobic010G224700 Sobic001G049800--Sobic010G224700 Sobic001G049800--Sobic006G111200 Sobic001G049800--Sobic006G059500 Sobic001G049800--Sobic002G378100 Sobic010G083900 Sobic010G083900 Sobic001G049800--Sobic010G083900 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic004G027300--Sobic002G378100 Sobic003G425100 Sobic003G425100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic004G027300--Sobic002G112600 Sobic008G068100 Sobic008G068100 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic005G088900 Sobic005G088900 Sobic009G191500--Sobic005G088900 Sobic002G003300 Sobic002G003300 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic009G191500--Sobic007G060600 Sobic003G336500 Sobic003G336500 Sobic009G191500--Sobic003G336500 Sobic001G453500--Sobic006G111200 Sobic001G453500--Sobic001G368300 Sobic001G453500--Sobic004G151000 Sobic006G140400 Sobic006G140400 Sobic001G453500--Sobic006G140400 Sobic004G027400 Sobic004G027400 Sobic001G453500--Sobic004G027400 Sobic001G453500--Sobic004G027300 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic010G097500--Sobic010G153300 Sobic010G097500--Sobic007G059700 Sobic002G043000 Sobic002G043000 Sobic010G097500--Sobic002G043000 Sobic009G177200 Sobic009G177200 Sobic010G097500--Sobic009G177200 Sobic006G008300 Sobic006G008300 Sobic010G097500--Sobic006G008300 Sobic010G097500--Sobic004G215900 Sobic003G104100 Sobic003G104100 Sobic010G097500--Sobic003G104100 Sobic010G097500--Sobic006G273900 Sobic001G199500 Sobic001G199500 Sobic010G097500--Sobic001G199500 Sobic006G111200--Sobic001G453500 Sobic006G111200--Sobic004G151000 Sobic006G111200--Sobic001G368300 Sobic006G111200--Sobic007G060600 Sobic006G111200--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G111200--Sobic006G059500 Sobic006G111200--Sobic007G059700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.