Gene annotation
Transcriptome id Sobic.001G368300.2,Sobic.001G368300.1
Synonym Sb01g035070
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt C5WZQ0
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF29
NCBI CDD KOG3002; Zn finger protein
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G61790 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os03g24040.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043224 , Zm00025a049038 , Zm00025a002526 , Zm00025a037085 , Zm00025a036869
Brachypodium KQK21646 , KQK21647 , KQK21648
Barley HORVU2Hr1G022590.8 , HORVU2Hr1G022590.6 , HORVU2Hr1G022590.7 , HORVU2Hr1G022590.4 , HORVU2Hr1G022590.3 , HORVU2Hr1G022590.1
Wheat TraesCS4A02G148400 , TraesCS4A02G148400 , TraesCS2B02G151100 , TraesCS2A02G129000 , TraesCS4D02G164700 , TraesCS2D02G131700
Populus -


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cDNA sequences
Sobic.001G368300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
2 Sobic.001G453500 expressed protein -
3 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
4 Sobic.004G027300 expressed protein -
5 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
6 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
7 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
8 Sobic.006G273900 expressed protein -
9 Sobic.003G436600 expressed protein -
10 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
11 Sobic.001G049800 DDT domain containing protein, putative, expressed -
12 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
13 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
14 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
15 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
16 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
17 Sobic.002G192500 ES43 protein, putative, expressed -
18 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
19 Sobic.004G199200 expressed protein K10858: DNA mismatch repair protein PMS2
20 Sobic.004G027400 - -


Gene co-expression network
sample Sobic001G368300 Sobic001G368300 Sobic006G111200 Sobic006G111200 Sobic001G368300--Sobic006G111200 Sobic001G453500 Sobic001G453500 Sobic001G368300--Sobic001G453500 Sobic007G060600 Sobic007G060600 Sobic001G368300--Sobic007G060600 Sobic004G027300 Sobic004G027300 Sobic001G368300--Sobic004G027300 Sobic001G040600 Sobic001G040600 Sobic001G368300--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic001G368300--Sobic007G059700 Sobic009G148200 Sobic009G148200 Sobic001G368300--Sobic009G148200 Sobic006G273900 Sobic006G273900 Sobic001G368300--Sobic006G273900 Sobic003G436600 Sobic003G436600 Sobic001G368300--Sobic003G436600 Sobic006G111200--Sobic001G453500 Sobic004G151000 Sobic004G151000 Sobic006G111200--Sobic004G151000 Sobic006G111200--Sobic001G368300 Sobic006G111200--Sobic007G060600 Sobic001G049800 Sobic001G049800 Sobic006G111200--Sobic001G049800 Sobic006G271900 Sobic006G271900 Sobic006G111200--Sobic006G271900 Sobic002G380100 Sobic002G380100 Sobic006G111200--Sobic002G380100 Sobic006G059500 Sobic006G059500 Sobic006G111200--Sobic006G059500 Sobic006G111200--Sobic007G059700 Sobic001G453500--Sobic006G111200 Sobic001G453500--Sobic001G368300 Sobic001G453500--Sobic004G151000 Sobic006G140400 Sobic006G140400 Sobic001G453500--Sobic006G140400 Sobic004G027400 Sobic004G027400 Sobic001G453500--Sobic004G027400 Sobic001G453500--Sobic004G027300 Sobic001G453500--Sobic001G049800 Sobic002G112600 Sobic002G112600 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G060600--Sobic007G059700 Sobic007G060600--Sobic004G151000 Sobic007G060600--Sobic004G027300 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic007G060600--Sobic006G111200 Sobic009G191500 Sobic009G191500 Sobic007G060600--Sobic009G191500 Sobic004G027300--Sobic004G151000 Sobic004G027300--Sobic001G049800 Sobic010G224700 Sobic010G224700 Sobic004G027300--Sobic010G224700 Sobic004G027300--Sobic007G060600 Sobic002G378100 Sobic002G378100 Sobic004G027300--Sobic002G378100 Sobic003G425100 Sobic003G425100 Sobic004G027300--Sobic003G425100 Sobic004G027300--Sobic001G453500 Sobic004G027300--Sobic007G059700 Sobic004G027300--Sobic002G112600 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic010G099300 Sobic010G099300 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G081300 Sobic001G081300 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic007G059700--Sobic006G273900 Sobic007G059700--Sobic007G060600 Sobic007G059700--Sobic004G151000 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic007G059700--Sobic009G191500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic007G059700--Sobic006G111200 Sobic006G067700 Sobic006G067700 Sobic009G148200--Sobic006G067700 Sobic003G104100 Sobic003G104100 Sobic009G148200--Sobic003G104100 Sobic010G050700 Sobic010G050700 Sobic009G148200--Sobic010G050700 Sobic004G199200 Sobic004G199200 Sobic009G148200--Sobic004G199200 Sobic010G277200 Sobic010G277200 Sobic009G148200--Sobic010G277200 Sobic009G148200--Sobic001G453500 Sobic002G216600 Sobic002G216600 Sobic009G148200--Sobic002G216600 Sobic009G066400 Sobic009G066400 Sobic009G148200--Sobic009G066400 Sobic009G148200--Sobic001G368300 Sobic006G273900--Sobic007G059700 Sobic006G273900--Sobic007G060600 Sobic006G273900--Sobic001G049800 Sobic006G273900--Sobic004G151000 Sobic006G273900--Sobic001G368300 Sobic006G273900--Sobic004G027300 Sobic006G273900--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic006G273900--Sobic004G215900 Sobic006G273900--Sobic006G111200 Sobic009G163600 Sobic009G163600 Sobic003G436600--Sobic009G163600 Sobic003G436600--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic003G436600--Sobic002G177500 Sobic003G436600--Sobic004G027400 Sobic003G436600--Sobic007G059700 Sobic003G436600--Sobic001G368300 Sobic005G088900 Sobic005G088900 Sobic003G436600--Sobic005G088900 Sobic003G361400 Sobic003G361400 Sobic003G436600--Sobic003G361400 Sobic003G436600--Sobic001G453500
Octagon: transcription factors


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