Gene annotation
Transcriptome id Sobic.010G277200.1
Synonym Sb10g031080
Functional annotation zinc knuckle domain containing protein, expressed
UniProt C5Z2L5
Pfam PF00098 PF07962
Panther DB PTHR13220
NCBI CDD KOG3004; Meiotic chromosome segregation protein
KEGG Orthology K10904; TIMELESS-interacting protein
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding GO:0007049cell cycle GO:0006974cellular response to DNA damage stimulus GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G02820 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os02g52460.1 : zinc knuckle domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018580
Brachypodium KQK16616 , PNT61077
Barley HORVU4Hr1G074650.1 , HORVU4Hr1G074650.2 , HORVU4Hr1G074650.3 , HORVU4Hr1G074650.4
Wheat -
Populus -


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cDNA sequences
Sobic.010G277200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
2 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
4 Sobic.004G199200 expressed protein K10858: DNA mismatch repair protein PMS2
5 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
7 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
8 Sobic.006G109400 pentatricopeptide, putative, expressed -
9 Sobic.003G351900 fasciclin-like arabinogalactan protein, putative, expressed -
10 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
11 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
12 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
13 Sobic.001G065300 GRF zinc finger family protein, expressed -
14 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.002G162000 - -
16 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
17 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
18 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
19 Sobic.005G204100 kelch repeat protein, putative, expressed -
20 Sobic.001G047200 carboxyl-terminal peptidase, putative, expressed -


Gene co-expression network
sample Sobic010G277200 Sobic010G277200 Sobic007G038700 Sobic007G038700 Sobic010G277200--Sobic007G038700 Sobic003G153900 Sobic003G153900 Sobic010G277200--Sobic003G153900 Sobic009G148200 Sobic009G148200 Sobic010G277200--Sobic009G148200 Sobic004G199200 Sobic004G199200 Sobic010G277200--Sobic004G199200 Sobic001G408300 Sobic001G408300 Sobic010G277200--Sobic001G408300 Sobic008G169400 Sobic008G169400 Sobic010G277200--Sobic008G169400 Sobic007G031300 Sobic007G031300 Sobic010G277200--Sobic007G031300 Sobic006G109400 Sobic006G109400 Sobic010G277200--Sobic006G109400 Sobic003G351900 Sobic003G351900 Sobic010G277200--Sobic003G351900 Sobic002G251800 Sobic002G251800 Sobic007G038700--Sobic002G251800 Sobic007G038700--Sobic010G277200 Sobic008G123200 Sobic008G123200 Sobic007G038700--Sobic008G123200 Sobic003G336500 Sobic003G336500 Sobic007G038700--Sobic003G336500 Sobic009G105400 Sobic009G105400 Sobic007G038700--Sobic009G105400 Sobic005G078700 Sobic005G078700 Sobic007G038700--Sobic005G078700 Sobic001G194700 Sobic001G194700 Sobic007G038700--Sobic001G194700 Sobic007G038700--Sobic003G153900 Sobic008G031200 Sobic008G031200 Sobic007G038700--Sobic008G031200 Sobic003G153900--Sobic003G351900 Sobic003G153900--Sobic008G169400 Sobic002G021200 Sobic002G021200 Sobic003G153900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic003G153900--Sobic006G281900 Sobic001G079900 Sobic001G079900 Sobic003G153900--Sobic001G079900 Sobic002G370400 Sobic002G370400 Sobic003G153900--Sobic002G370400 Sobic001G369800 Sobic001G369800 Sobic003G153900--Sobic001G369800 Sobic009G212100 Sobic009G212100 Sobic003G153900--Sobic009G212100 Sobic006G008300 Sobic006G008300 Sobic003G153900--Sobic006G008300 Sobic006G067700 Sobic006G067700 Sobic009G148200--Sobic006G067700 Sobic003G104100 Sobic003G104100 Sobic009G148200--Sobic003G104100 Sobic010G050700 Sobic010G050700 Sobic009G148200--Sobic010G050700 Sobic009G148200--Sobic004G199200 Sobic009G148200--Sobic010G277200 Sobic001G453500 Sobic001G453500 Sobic009G148200--Sobic001G453500 Sobic002G216600 Sobic002G216600 Sobic009G148200--Sobic002G216600 Sobic009G066400 Sobic009G066400 Sobic009G148200--Sobic009G066400 Sobic001G368300 Sobic001G368300 Sobic009G148200--Sobic001G368300 Sobic009G216500 Sobic009G216500 Sobic004G199200--Sobic009G216500 Sobic004G199200--Sobic009G148200 Sobic004G199200--Sobic009G105400 Sobic006G022400 Sobic006G022400 Sobic004G199200--Sobic006G022400 Sobic001G264201 Sobic001G264201 Sobic004G199200--Sobic001G264201 Sobic004G199200--Sobic003G104100 Sobic001G395200 Sobic001G395200 Sobic004G199200--Sobic001G395200 Sobic004G199200--Sobic010G277200 Sobic010G013500 Sobic010G013500 Sobic004G199200--Sobic010G013500 Sobic007G006800 Sobic007G006800 Sobic001G408300--Sobic007G006800 Sobic010G250800 Sobic010G250800 Sobic001G408300--Sobic010G250800 Sobic010G065800 Sobic010G065800 Sobic001G408300--Sobic010G065800 Sobic010G038800 Sobic010G038800 Sobic001G408300--Sobic010G038800 Sobic001G061800 Sobic001G061800 Sobic001G408300--Sobic001G061800 Sobic006G208400 Sobic006G208400 Sobic001G408300--Sobic006G208400 Sobic005G088900 Sobic005G088900 Sobic001G408300--Sobic005G088900 Sobic009G010300 Sobic009G010300 Sobic001G408300--Sobic009G010300 Sobic010G252700 Sobic010G252700 Sobic001G408300--Sobic010G252700 Sobic008G169400--Sobic001G079900 Sobic008G169400--Sobic003G153900 Sobic008G169400--Sobic007G031300 Sobic009G141700 Sobic009G141700 Sobic008G169400--Sobic009G141700 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic007G031300--Sobic008G169400 Sobic001G211500 Sobic001G211500 Sobic007G031300--Sobic001G211500 Sobic004G129500 Sobic004G129500 Sobic007G031300--Sobic004G129500 Sobic001G296800 Sobic001G296800 Sobic007G031300--Sobic001G296800 Sobic002G430900 Sobic002G430900 Sobic007G031300--Sobic002G430900 Sobic003G028400 Sobic003G028400 Sobic007G031300--Sobic003G028400 Sobic001G210000 Sobic001G210000 Sobic007G031300--Sobic001G210000 Sobic007G031300--Sobic003G153900 Sobic003G212600 Sobic003G212600 Sobic007G031300--Sobic003G212600 Sobic007G030000 Sobic007G030000 Sobic006G109400--Sobic007G030000 Sobic001G347100 Sobic001G347100 Sobic006G109400--Sobic001G347100 Sobic008G099900 Sobic008G099900 Sobic006G109400--Sobic008G099900 Sobic006G069100 Sobic006G069100 Sobic006G109400--Sobic006G069100 Sobic006G109400--Sobic001G408300 Sobic006G109400--Sobic010G038800 Sobic006G109400--Sobic010G277200 Sobic009G155400 Sobic009G155400 Sobic006G109400--Sobic009G155400 Sobic005G210700 Sobic005G210700 Sobic006G109400--Sobic005G210700 Sobic006G142500 Sobic006G142500 Sobic003G351900--Sobic006G142500 Sobic003G351900--Sobic001G079900 Sobic002G006100 Sobic002G006100 Sobic003G351900--Sobic002G006100 Sobic002G027600 Sobic002G027600 Sobic003G351900--Sobic002G027600 Sobic003G351900--Sobic003G153900 Sobic001G212600 Sobic001G212600 Sobic003G351900--Sobic001G212600 Sobic005G032600 Sobic005G032600 Sobic003G351900--Sobic005G032600 Sobic004G164700 Sobic004G164700 Sobic003G351900--Sobic004G164700 Sobic003G351900--Sobic001G395200
Octagon: transcription factors


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