Gene annotation
Transcriptome id Sobic.002G110500.1
Synonym Sb02g009450
Functional annotation expressed protein
UniProt C5X481
Pfam PF13874
Panther DB PTHR13000
NCBI CDD KOG3091; Nuclear pore complex, p54 component (sc Nup57)
KEGG Orthology K14308; NUP54, nuclear pore complex protein Nup54
Gene Ontology GO:0005643; nuclear pore


Orthologs (automatic annotation)
TAIR AT1G24310 : -
RAP-DB (Rice) LOC_Os07g19494.1 : expressed protein
MaizeGDB (Corn) Zm00025a045651
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G088900 AGAP007117-PA, putative, expressed -
2 Sobic.007G006800 pentatricopeptide, putative, expressed -
3 Sobic.009G216500 expressed protein -
4 Sobic.010G250800 DNA binding protein, putative, expressed -
5 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
6 Sobic.006G106200 NAP domain containing protein, putative, expressed K11290: SET, TAF1, template-activating factor I
7 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
8 Sobic.009G031500 agenet domain containing protein, putative, expressed -
9 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
10 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
11 Sobic.010G097500 DNA polymerase lambda, putative, expressed K03512: DNA polymerase lambda
12 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
13 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
14 Sobic.001G540700 expressed protein -
15 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
16 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
17 Sobic.004G207000 fasciated ear2, putative, expressed -
18 Sobic.003G436600 expressed protein -
19 Sobic.003G352100 pentatricopeptide, putative, expressed -
20 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1


Gene co-expression network
sample Sobic002G110500 Sobic002G110500 Sobic005G088900 Sobic005G088900 Sobic002G110500--Sobic005G088900 Sobic007G006800 Sobic007G006800 Sobic002G110500--Sobic007G006800 Sobic009G216500 Sobic009G216500 Sobic002G110500--Sobic009G216500 Sobic010G250800 Sobic010G250800 Sobic002G110500--Sobic010G250800 Sobic001G097400 Sobic001G097400 Sobic002G110500--Sobic001G097400 Sobic006G106200 Sobic006G106200 Sobic002G110500--Sobic006G106200 Sobic001G199500 Sobic001G199500 Sobic002G110500--Sobic001G199500 Sobic009G031500 Sobic009G031500 Sobic002G110500--Sobic009G031500 Sobic010G041000 Sobic010G041000 Sobic002G110500--Sobic010G041000 Sobic005G088900--Sobic001G199500 Sobic009G191500 Sobic009G191500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic007G006800--Sobic010G250800 Sobic007G006800--Sobic001G199500 Sobic001G408300 Sobic001G408300 Sobic007G006800--Sobic001G408300 Sobic007G006800--Sobic005G088900 Sobic008G113300 Sobic008G113300 Sobic007G006800--Sobic008G113300 Sobic002G021200 Sobic002G021200 Sobic007G006800--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic007G006800--Sobic006G281900 Sobic003G369200 Sobic003G369200 Sobic007G006800--Sobic003G369200 Sobic002G215200 Sobic002G215200 Sobic007G006800--Sobic002G215200 Sobic006G022400 Sobic006G022400 Sobic009G216500--Sobic006G022400 Sobic004G199200 Sobic004G199200 Sobic009G216500--Sobic004G199200 Sobic004G149400 Sobic004G149400 Sobic009G216500--Sobic004G149400 Sobic006G008300 Sobic006G008300 Sobic009G216500--Sobic006G008300 Sobic008G045000 Sobic008G045000 Sobic009G216500--Sobic008G045000 Sobic009G216500--Sobic006G106200 Sobic004G207000 Sobic004G207000 Sobic009G216500--Sobic004G207000 Sobic004G313500 Sobic004G313500 Sobic009G216500--Sobic004G313500 Sobic005G062600 Sobic005G062600 Sobic009G216500--Sobic005G062600 Sobic009G052100 Sobic009G052100 Sobic010G250800--Sobic009G052100 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic010G250800--Sobic005G088900 Sobic009G049200 Sobic009G049200 Sobic010G250800--Sobic009G049200 Sobic004G038100 Sobic004G038100 Sobic010G250800--Sobic004G038100 Sobic001G235700 Sobic001G235700 Sobic001G097400--Sobic001G235700 Sobic001G436300 Sobic001G436300 Sobic001G097400--Sobic001G436300 Sobic001G097400--Sobic005G088900 Sobic006G127500 Sobic006G127500 Sobic001G097400--Sobic006G127500 Sobic001G097400--Sobic002G110500 Sobic003G098200 Sobic003G098200 Sobic001G097400--Sobic003G098200 Sobic001G097400--Sobic003G432300 Sobic001G149100 Sobic001G149100 Sobic001G097400--Sobic001G149100 Sobic006G251600 Sobic006G251600 Sobic001G097400--Sobic006G251600 Sobic001G211500 Sobic001G211500 Sobic006G106200--Sobic001G211500 Sobic008G070700 Sobic008G070700 Sobic006G106200--Sobic008G070700 Sobic010G222800 Sobic010G222800 Sobic006G106200--Sobic010G222800 Sobic003G072500 Sobic003G072500 Sobic006G106200--Sobic003G072500 Sobic003G289700 Sobic003G289700 Sobic006G106200--Sobic003G289700 Sobic006G106200--Sobic004G149400 Sobic001G005800 Sobic001G005800 Sobic006G106200--Sobic001G005800 Sobic006G106200--Sobic009G216500 Sobic002G112000 Sobic002G112000 Sobic006G106200--Sobic002G112000 Sobic001G199500--Sobic005G088900 Sobic003G102700 Sobic003G102700 Sobic001G199500--Sobic003G102700 Sobic006G084300 Sobic006G084300 Sobic001G199500--Sobic006G084300 Sobic003G024000 Sobic003G024000 Sobic001G199500--Sobic003G024000 Sobic001G199500--Sobic006G281900 Sobic009G188900 Sobic009G188900 Sobic001G199500--Sobic009G188900 Sobic001G199500--Sobic007G006800 Sobic001G199500--Sobic006G071628 Sobic001G199500--Sobic003G144000 Sobic009G031500--Sobic004G207000 Sobic001G540700 Sobic001G540700 Sobic009G031500--Sobic001G540700 Sobic006G126600 Sobic006G126600 Sobic009G031500--Sobic006G126600 Sobic007G125700 Sobic007G125700 Sobic009G031500--Sobic007G125700 Sobic001G487200 Sobic001G487200 Sobic009G031500--Sobic001G487200 Sobic003G274400 Sobic003G274400 Sobic009G031500--Sobic003G274400 Sobic003G077500 Sobic003G077500 Sobic009G031500--Sobic003G077500 Sobic004G206300 Sobic004G206300 Sobic009G031500--Sobic004G206300 Sobic003G027800 Sobic003G027800 Sobic009G031500--Sobic003G027800 Sobic004G305100 Sobic004G305100 Sobic010G041000--Sobic004G305100 Sobic004G111000 Sobic004G111000 Sobic010G041000--Sobic004G111000 Sobic003G098900 Sobic003G098900 Sobic010G041000--Sobic003G098900 Sobic001G008000 Sobic001G008000 Sobic010G041000--Sobic001G008000 Sobic003G361400 Sobic003G361400 Sobic010G041000--Sobic003G361400 Sobic001G502600 Sobic001G502600 Sobic010G041000--Sobic001G502600 Sobic010G041000--Sobic002G110500 Sobic010G041000--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic010G041000--Sobic007G059700
Octagon: transcription factors


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