Gene annotation
Transcriptome id Sobic.003G436600.1
Synonym Sb03g046740
Functional annotation expressed protein
UniProt C5XIN7
Pfam PF04438
Panther DB PTHR13483 PTHR13483:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G04945 : HIT-type Zinc finger family protein
RAP-DB (Rice) LOC_Os01g73150.1 : expressed protein
MaizeGDB (Corn) Zm00025a025895
Brachypodium KQK11672
Barley -
Wheat TraesCS3D02G515300 , TraesCS3A02G507700 , TraesCS3B02G576100
Populus -


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cDNA sequences
Sobic.003G436600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
2 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
3 Sobic.002G177500 expressed protein -
4 Sobic.004G027400 - -
5 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
6 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
7 Sobic.005G088900 AGAP007117-PA, putative, expressed -
8 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
9 Sobic.001G453500 expressed protein -
10 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
11 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
12 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
14 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
15 Sobic.006G273900 expressed protein -
16 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
17 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
18 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
19 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
20 Sobic.003G098900 - -


Gene co-expression network
sample Sobic003G436600 Sobic003G436600 Sobic009G163600 Sobic009G163600 Sobic003G436600--Sobic009G163600 Sobic003G425100 Sobic003G425100 Sobic003G436600--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic003G436600--Sobic002G177500 Sobic004G027400 Sobic004G027400 Sobic003G436600--Sobic004G027400 Sobic007G059700 Sobic007G059700 Sobic003G436600--Sobic007G059700 Sobic001G368300 Sobic001G368300 Sobic003G436600--Sobic001G368300 Sobic005G088900 Sobic005G088900 Sobic003G436600--Sobic005G088900 Sobic003G361400 Sobic003G361400 Sobic003G436600--Sobic003G361400 Sobic001G453500 Sobic001G453500 Sobic003G436600--Sobic001G453500 Sobic009G163600--Sobic003G425100 Sobic009G163600--Sobic003G436600 Sobic002G112600 Sobic002G112600 Sobic009G163600--Sobic002G112600 Sobic010G224700 Sobic010G224700 Sobic009G163600--Sobic010G224700 Sobic001G322600 Sobic001G322600 Sobic009G163600--Sobic001G322600 Sobic008G163500 Sobic008G163500 Sobic009G163600--Sobic008G163500 Sobic004G038100 Sobic004G038100 Sobic009G163600--Sobic004G038100 Sobic009G163600--Sobic007G059700 Sobic006G140400 Sobic006G140400 Sobic009G163600--Sobic006G140400 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G425100--Sobic003G436600 Sobic006G198600 Sobic006G198600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic001G370300 Sobic001G370300 Sobic002G177500--Sobic001G370300 Sobic004G285000 Sobic004G285000 Sobic002G177500--Sobic004G285000 Sobic001G168100 Sobic001G168100 Sobic002G177500--Sobic001G168100 Sobic002G177500--Sobic003G436600 Sobic001G013300 Sobic001G013300 Sobic002G177500--Sobic001G013300 Sobic002G223300 Sobic002G223300 Sobic002G177500--Sobic002G223300 Sobic002G399200 Sobic002G399200 Sobic002G177500--Sobic002G399200 Sobic006G226300 Sobic006G226300 Sobic002G177500--Sobic006G226300 Sobic009G151200 Sobic009G151200 Sobic002G177500--Sobic009G151200 Sobic004G215900 Sobic004G215900 Sobic004G027400--Sobic004G215900 Sobic004G027400--Sobic001G453500 Sobic004G027400--Sobic002G112600 Sobic004G027400--Sobic004G027300 Sobic008G068100 Sobic008G068100 Sobic004G027400--Sobic008G068100 Sobic004G027400--Sobic010G224700 Sobic004G027400--Sobic006G140400 Sobic004G027400--Sobic005G028100 Sobic007G014800 Sobic007G014800 Sobic004G027400--Sobic007G014800 Sobic006G273900 Sobic006G273900 Sobic007G059700--Sobic006G273900 Sobic007G060600 Sobic007G060600 Sobic007G059700--Sobic007G060600 Sobic004G151000 Sobic004G151000 Sobic007G059700--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic009G191500 Sobic009G191500 Sobic007G059700--Sobic009G191500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic006G111200 Sobic006G111200 Sobic007G059700--Sobic006G111200 Sobic001G368300--Sobic006G111200 Sobic001G368300--Sobic001G453500 Sobic001G368300--Sobic007G060600 Sobic001G368300--Sobic004G027300 Sobic001G040600 Sobic001G040600 Sobic001G368300--Sobic001G040600 Sobic001G368300--Sobic007G059700 Sobic009G148200 Sobic009G148200 Sobic001G368300--Sobic009G148200 Sobic001G368300--Sobic006G273900 Sobic001G368300--Sobic003G436600 Sobic001G199500 Sobic001G199500 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic003G259600 Sobic003G259600 Sobic003G361400--Sobic003G259600 Sobic001G373000 Sobic001G373000 Sobic003G361400--Sobic001G373000 Sobic002G219900 Sobic002G219900 Sobic003G361400--Sobic002G219900 Sobic003G361400--Sobic004G038100 Sobic003G361400--Sobic001G013300 Sobic002G043000 Sobic002G043000 Sobic003G361400--Sobic002G043000 Sobic001G033900 Sobic001G033900 Sobic003G361400--Sobic001G033900 Sobic002G372500 Sobic002G372500 Sobic003G361400--Sobic002G372500 Sobic003G360300 Sobic003G360300 Sobic003G361400--Sobic003G360300 Sobic001G453500--Sobic006G111200 Sobic001G453500--Sobic001G368300 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic001G453500--Sobic004G027400 Sobic001G453500--Sobic004G027300 Sobic001G453500--Sobic001G049800 Sobic001G453500--Sobic002G112600 Sobic009G105400 Sobic009G105400 Sobic001G453500--Sobic009G105400
Octagon: transcription factors


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