Gene annotation
Transcriptome id Sobic.003G336500.1
Synonym Sb03g038070
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
KH domain containing protein, putative, expressed
UniProt C5XN89
Pfam PF16544
Panther DB PTHR11208 PTHR11208:SF49
NCBI CDD KOG1588; RNA-binding protein Sam68 and related KH domain proteins
KEGG Orthology K14945; protein quaking
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38610 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os01g60260.2 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044028 , Zm00025a039780 , Zm00025a027077
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
2 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
3 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
4 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
5 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
6 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
7 Sobic.005G088900 AGAP007117-PA, putative, expressed -
8 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
9 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
11 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
12 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
13 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
14 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
15 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
16 Sobic.005G079201 - -
17 Sobic.004G192500 protein kinase PKN/PRK1, effector, putative, expressed -
18 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
19 Sobic.002G256800 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
20 Sobic.007G092200 aspartate carbamoyltransferase, putative, expressed K00609: pyrB, aspartate carbamoyltransferase catalytic subunit


Gene co-expression network
sample Sobic003G336500 Sobic003G336500 Sobic008G068100 Sobic008G068100 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic009G191500 Sobic009G191500 Sobic003G336500--Sobic009G191500 Sobic007G060600 Sobic007G060600 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic001G483800 Sobic001G483800 Sobic003G336500--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic008G068100--Sobic009G191500 Sobic004G215900 Sobic004G215900 Sobic008G068100--Sobic004G215900 Sobic005G079201 Sobic005G079201 Sobic008G068100--Sobic005G079201 Sobic006G236000 Sobic006G236000 Sobic008G068100--Sobic006G236000 Sobic002G003300 Sobic002G003300 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic001G024000 Sobic001G024000 Sobic008G068100--Sobic001G024000 Sobic001G040600--Sobic007G060600 Sobic006G271900 Sobic006G271900 Sobic001G040600--Sobic006G271900 Sobic010G099300 Sobic010G099300 Sobic001G040600--Sobic010G099300 Sobic001G040600--Sobic003G336500 Sobic001G049800 Sobic001G049800 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic001G040600--Sobic008G100400 Sobic001G081300 Sobic001G081300 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic009G191500--Sobic001G483800 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic007G060600--Sobic001G049800 Sobic007G060600--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic007G060600--Sobic007G059700 Sobic004G151000 Sobic004G151000 Sobic007G060600--Sobic004G151000 Sobic004G027300 Sobic004G027300 Sobic007G060600--Sobic004G027300 Sobic006G273900 Sobic006G273900 Sobic007G060600--Sobic006G273900 Sobic009G238700 Sobic009G238700 Sobic007G060600--Sobic009G238700 Sobic006G111200 Sobic006G111200 Sobic007G060600--Sobic006G111200 Sobic007G060600--Sobic009G191500 Sobic001G199500--Sobic005G088900 Sobic003G102700 Sobic003G102700 Sobic001G199500--Sobic003G102700 Sobic006G084300 Sobic006G084300 Sobic001G199500--Sobic006G084300 Sobic003G024000 Sobic003G024000 Sobic001G199500--Sobic003G024000 Sobic006G281900 Sobic006G281900 Sobic001G199500--Sobic006G281900 Sobic009G188900 Sobic009G188900 Sobic001G199500--Sobic009G188900 Sobic007G006800 Sobic007G006800 Sobic001G199500--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic001G199500--Sobic006G071628 Sobic003G144000 Sobic003G144000 Sobic001G199500--Sobic003G144000 Sobic001G372800 Sobic001G372800 Sobic001G483800--Sobic001G372800 Sobic001G483800--Sobic009G191500 Sobic001G483800--Sobic008G068100 Sobic002G268100 Sobic002G268100 Sobic001G483800--Sobic002G268100 Sobic009G010300 Sobic009G010300 Sobic001G483800--Sobic009G010300 Sobic001G483800--Sobic003G336500 Sobic005G028100 Sobic005G028100 Sobic001G483800--Sobic005G028100 Sobic001G483800--Sobic005G088900 Sobic003G322200 Sobic003G322200 Sobic001G483800--Sobic003G322200 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic005G088900--Sobic009G176300 Sobic005G088900--Sobic004G215900 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic005G088900--Sobic002G003300 Sobic009G176300--Sobic005G088900 Sobic009G176300--Sobic008G068100 Sobic009G176300--Sobic009G191500 Sobic009G176300--Sobic003G432300 Sobic009G176300--Sobic003G336500 Sobic003G235700 Sobic003G235700 Sobic009G176300--Sobic003G235700 Sobic009G176300--Sobic005G028100 Sobic009G176300--Sobic001G199500 Sobic004G027400 Sobic004G027400 Sobic009G176300--Sobic004G027400 Sobic007G182600 Sobic007G182600 Sobic008G100400--Sobic007G182600 Sobic008G100400--Sobic001G040600 Sobic008G100400--Sobic003G336500 Sobic010G157700 Sobic010G157700 Sobic008G100400--Sobic010G157700 Sobic008G147400 Sobic008G147400 Sobic008G100400--Sobic008G147400 Sobic009G096100 Sobic009G096100 Sobic008G100400--Sobic009G096100 Sobic008G100400--Sobic001G081300 Sobic008G100400--Sobic010G099300 Sobic009G148200 Sobic009G148200 Sobic008G100400--Sobic009G148200
Octagon: transcription factors


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