Gene annotation
Transcriptome id Sobic.008G100400.3,Sobic.008G100400.1
Synonym Sb08g015300, DOT4,
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
"SMK1(Ortholog in maize:Li et al., 2014)" (PubMedID : 31659912)
tetratricopeptide-like helical, putative, expressed
UniProt A0A1Z5R5U6
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF713
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23330 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os11g10740.1 : tetratricopeptide-like helical, putative, expressed
MaizeGDB (Corn) Zm00025a015367
Brachypodium PNT63939 , PNT63940 , KQJ88971
Barley HORVU4Hr1G016720.8 , HORVU4Hr1G016720.4 , HORVU4Hr1G016720.5 , HORVU4Hr1G016720.6 , HORVU4Hr1G016720.7 , HORVU4Hr1G016720.1 , HORVU4Hr1G016720.2 , HORVU4Hr1G016720.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
3 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
4 Sobic.010G157700 expressed protein -
5 Sobic.008G147400 "responsible for fertility restoration, localized in anthers"(PubMedID : 20585750)@tetratricopeptide-like helical, putative, expressed -
6 Sobic.009G096100 endoribonuclease Dicer, putative, expressed -
7 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
9 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
10 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
11 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
12 Sobic.001G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
13 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
14 Sobic.002G256800 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
15 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
16 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
17 Sobic.010G091500 pentatricopeptide, putative, expressed -
18 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
19 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
20 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G100400 Sobic008G100400 Sobic007G182600 Sobic007G182600 Sobic008G100400--Sobic007G182600 Sobic001G040600 Sobic001G040600 Sobic008G100400--Sobic001G040600 Sobic003G336500 Sobic003G336500 Sobic008G100400--Sobic003G336500 Sobic010G157700 Sobic010G157700 Sobic008G100400--Sobic010G157700 Sobic008G147400 Sobic008G147400 Sobic008G100400--Sobic008G147400 Sobic009G096100 Sobic009G096100 Sobic008G100400--Sobic009G096100 Sobic001G081300 Sobic001G081300 Sobic008G100400--Sobic001G081300 Sobic010G099300 Sobic010G099300 Sobic008G100400--Sobic010G099300 Sobic009G148200 Sobic009G148200 Sobic008G100400--Sobic009G148200 Sobic007G182600--Sobic008G100400 Sobic007G182600--Sobic010G099300 Sobic001G061600 Sobic001G061600 Sobic007G182600--Sobic001G061600 Sobic007G182600--Sobic001G081300 Sobic007G182600--Sobic001G040600 Sobic007G182600--Sobic008G147400 Sobic003G051500 Sobic003G051500 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100 Sobic007G060600 Sobic007G060600 Sobic001G040600--Sobic007G060600 Sobic006G271900 Sobic006G271900 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic001G040600--Sobic003G336500 Sobic001G049800 Sobic001G049800 Sobic001G040600--Sobic001G049800 Sobic001G040600--Sobic003G051500 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic002G251800 Sobic002G251800 Sobic001G040600--Sobic002G251800 Sobic008G068100 Sobic008G068100 Sobic003G336500--Sobic008G068100 Sobic003G336500--Sobic001G040600 Sobic009G191500 Sobic009G191500 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic001G199500 Sobic001G199500 Sobic003G336500--Sobic001G199500 Sobic001G483800 Sobic001G483800 Sobic003G336500--Sobic001G483800 Sobic005G088900 Sobic005G088900 Sobic003G336500--Sobic005G088900 Sobic009G176300 Sobic009G176300 Sobic003G336500--Sobic009G176300 Sobic003G336500--Sobic008G100400 Sobic010G157700--Sobic009G096100 Sobic001G236800 Sobic001G236800 Sobic010G157700--Sobic001G236800 Sobic010G157700--Sobic008G100400 Sobic008G186500 Sobic008G186500 Sobic010G157700--Sobic008G186500 Sobic010G157700--Sobic007G182600 Sobic010G157700--Sobic002G380100 Sobic007G000400 Sobic007G000400 Sobic010G157700--Sobic007G000400 Sobic003G267000 Sobic003G267000 Sobic010G157700--Sobic003G267000 Sobic001G321400 Sobic001G321400 Sobic010G157700--Sobic001G321400 Sobic008G147400--Sobic007G182600 Sobic008G147400--Sobic008G100400 Sobic002G344500 Sobic002G344500 Sobic008G147400--Sobic002G344500 Sobic008G147400--Sobic010G099300 Sobic008G147400--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic008G147400--Sobic005G028300 Sobic001G322600 Sobic001G322600 Sobic008G147400--Sobic001G322600 Sobic008G147400--Sobic009G096100 Sobic003G419800 Sobic003G419800 Sobic008G147400--Sobic003G419800 Sobic008G056900 Sobic008G056900 Sobic009G096100--Sobic008G056900 Sobic002G192500 Sobic002G192500 Sobic009G096100--Sobic002G192500 Sobic009G096100--Sobic010G157700 Sobic001G485600 Sobic001G485600 Sobic009G096100--Sobic001G485600 Sobic006G056000 Sobic006G056000 Sobic009G096100--Sobic006G056000 Sobic007G043900 Sobic007G043900 Sobic009G096100--Sobic007G043900 Sobic009G096100--Sobic002G344500 Sobic009G096100--Sobic002G380100 Sobic007G077700 Sobic007G077700 Sobic009G096100--Sobic007G077700 Sobic001G391101 Sobic001G391101 Sobic001G081300--Sobic001G391101 Sobic007G179600 Sobic007G179600 Sobic001G081300--Sobic007G179600 Sobic001G347100 Sobic001G347100 Sobic001G081300--Sobic001G347100 Sobic009G238700 Sobic009G238700 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300 Sobic010G099300--Sobic001G040600 Sobic010G099300--Sobic007G182600 Sobic010G099300--Sobic007G060600 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic010G099300--Sobic001G049800 Sobic010G099300--Sobic003G051500 Sobic001G395300 Sobic001G395300 Sobic010G099300--Sobic001G395300 Sobic010G099300--Sobic006G271900 Sobic006G067700 Sobic006G067700 Sobic009G148200--Sobic006G067700 Sobic003G104100 Sobic003G104100 Sobic009G148200--Sobic003G104100 Sobic010G050700 Sobic010G050700 Sobic009G148200--Sobic010G050700 Sobic004G199200 Sobic004G199200 Sobic009G148200--Sobic004G199200 Sobic010G277200 Sobic010G277200 Sobic009G148200--Sobic010G277200 Sobic001G453500 Sobic001G453500 Sobic009G148200--Sobic001G453500 Sobic002G216600 Sobic002G216600 Sobic009G148200--Sobic002G216600 Sobic009G066400 Sobic009G066400 Sobic009G148200--Sobic009G066400 Sobic001G368300 Sobic001G368300 Sobic009G148200--Sobic001G368300
Octagon: transcription factors


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