Gene annotation
Transcriptome id Sobic.001G268700.2,Sobic.001G268700.1,Sobic.001G268700.3
Synonym Sb01g026390
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
lysosomal alpha-mannosidase precursor, putative, expressed
UniProt C5WP48 , A0A1Z5S817 , A0A1Z5S8A2
Pfam PF09261 PF01074 PF07748
Panther DB PTHR11607 PTHR11607:SF18
NCBI CDD -
KEGG Orthology K01191; alpha-mannosidase
Gene Ontology GO:0008270; zinc ion binding GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds GO:0005975carbohydrate metabolic process GO:0004559alpha-mannosidase activity GO:0015923mannosidase activity GO:0006013mannose metabolic process


Orthologs (automatic annotation)
TAIR AT5G66150 : Glycosyl hydrolase family 38 protein
RAP-DB (Rice) LOC_Os10g05069.2,LOC_Os10g05069.1 : lysosomal alpha-mannosidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a003725 , Zm00025a003751 , Zm00025a003741
Brachypodium KQJ96121 , PNT63560 , PNT63561 , KQJ88371
Barley HORVU5Hr1G113880.38 , HORVU5Hr1G113880.34 , HORVU5Hr1G113880.37 , HORVU5Hr1G113880.30 , HORVU5Hr1G113880.32 , HORVU5Hr1G113880.33 , HORVU5Hr1G113880.4 , HORVU5Hr1G113880.7 , HORVU5Hr1G113880.1 , HORVU5Hr1G113880.2 , HORVU5Hr1G113880.3 , HORVU5Hr1G113880.8 , HORVU5Hr1G113880.16 , HORVU5Hr1G113880.17 , HORVU5Hr1G113880.14 , HORVU5Hr1G113880.15 , HORVU5Hr1G113880.12 , HORVU5Hr1G113880.13 , HORVU5Hr1G113880.10 , HORVU5Hr1G113880.11 , HORVU5Hr1G113880.18 , HORVU5Hr1G113880.19 , HORVU5Hr1G113880.9 , HORVU5Hr1G113880.29 , HORVU5Hr1G113880.28 , HORVU5Hr1G113880.27 , HORVU5Hr1G113880.26 , HORVU5Hr1G113880.25 , HORVU5Hr1G113880.24 , HORVU5Hr1G113880.23 , HORVU5Hr1G113880.22 , HORVU5Hr1G113880.21 , HORVU5Hr1G113880.20
Wheat TraesCS5B02G496400 , TraesCS1B02G106500 , TraesCS1B02G106400 , TraesCS1B02G106400 , TraesCS5D02G496800 , TraesCS5D02G496800 , TraesCS1A02G087500 , TraesCS1A02G087500 , TraesCS5A02G483300 , TraesCS2A02G451000 , TraesCS1D02G088800 , TraesCS1D02G088800 , TraesCS5B02G496400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G268700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
2 Sobic.010G221200 neurochondrin family protein, putative, expressed -
3 Sobic.005G120600 Highest expression level in embryo(PubMedID : 27501690)@OsSPL19 - SBP-box gene family member, expressed -
4 Sobic.004G116500 expressed protein -
5 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C
6 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
7 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
8 Sobic.010G063566 - K11111: TERF2, telomeric repeat-binding factor 2
9 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.010G013500 growth-regulating factor, putative, expressed -
11 Sobic.006G073100 protein phosphatase 2C, putative, expressed -
12 Sobic.002G378600 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
13 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
14 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
15 Sobic.002G416150 - -
16 Sobic.006G210200 zinc finger domain, LSD1 subclass family protein, expressed -
17 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
18 Sobic.002G341200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed -
19 Sobic.004G085300 Sel1 repeat domain containing protein, putative, expressed -
20 Sobic.002G140800 RNA pseudouridine synthase, putative, expressed -


Gene co-expression network
sample Sobic001G268700 Sobic001G268700 Sobic002G050500 Sobic002G050500 Sobic001G268700--Sobic002G050500 Sobic010G221200 Sobic010G221200 Sobic001G268700--Sobic010G221200 Sobic005G120600 Sobic005G120600 Sobic001G268700--Sobic005G120600 Sobic004G116500 Sobic004G116500 Sobic001G268700--Sobic004G116500 Sobic003G107900 Sobic003G107900 Sobic001G268700--Sobic003G107900 Sobic002G223300 Sobic002G223300 Sobic001G268700--Sobic002G223300 Sobic001G372900 Sobic001G372900 Sobic001G268700--Sobic001G372900 Sobic010G063566 Sobic010G063566 Sobic001G268700--Sobic010G063566 Sobic008G100400 Sobic008G100400 Sobic001G268700--Sobic008G100400 Sobic006G210200 Sobic006G210200 Sobic002G050500--Sobic006G210200 Sobic002G050500--Sobic001G268700 Sobic002G140800 Sobic002G140800 Sobic002G050500--Sobic002G140800 Sobic008G056350 Sobic008G056350 Sobic002G050500--Sobic008G056350 Sobic001G045700 Sobic001G045700 Sobic002G050500--Sobic001G045700 Sobic002G060450 Sobic002G060450 Sobic002G050500--Sobic002G060450 Sobic001G454301 Sobic001G454301 Sobic002G050500--Sobic001G454301 Sobic002G050500--Sobic002G223300 Sobic003G128600 Sobic003G128600 Sobic002G050500--Sobic003G128600 Sobic010G221200--Sobic004G116500 Sobic010G221200--Sobic001G268700 Sobic010G221200--Sobic005G120600 Sobic003G102700 Sobic003G102700 Sobic010G221200--Sobic003G102700 Sobic010G013500 Sobic010G013500 Sobic010G221200--Sobic010G013500 Sobic010G221200--Sobic001G372900 Sobic006G084300 Sobic006G084300 Sobic010G221200--Sobic006G084300 Sobic002G416150 Sobic002G416150 Sobic010G221200--Sobic002G416150 Sobic009G028100 Sobic009G028100 Sobic010G221200--Sobic009G028100 Sobic005G120600--Sobic004G116500 Sobic005G120600--Sobic001G268700 Sobic005G120600--Sobic010G221200 Sobic004G141000 Sobic004G141000 Sobic005G120600--Sobic004G141000 Sobic005G120600--Sobic002G416150 Sobic005G120600--Sobic010G013500 Sobic005G139300 Sobic005G139300 Sobic005G120600--Sobic005G139300 Sobic002G002500 Sobic002G002500 Sobic005G120600--Sobic002G002500 Sobic004G286250 Sobic004G286250 Sobic005G120600--Sobic004G286250 Sobic004G116500--Sobic005G120600 Sobic004G116500--Sobic010G221200 Sobic004G248700 Sobic004G248700 Sobic004G116500--Sobic004G248700 Sobic004G116500--Sobic002G416150 Sobic004G116500--Sobic001G268700 Sobic004G289500 Sobic004G289500 Sobic004G116500--Sobic004G289500 Sobic006G269600 Sobic006G269600 Sobic004G116500--Sobic006G269600 Sobic009G155900 Sobic009G155900 Sobic004G116500--Sobic009G155900 Sobic004G116500--Sobic002G050500 Sobic003G107900--Sobic001G268700 Sobic003G107900--Sobic002G223300 Sobic003G244700 Sobic003G244700 Sobic003G107900--Sobic003G244700 Sobic003G107900--Sobic001G372900 Sobic003G107900--Sobic010G013500 Sobic008G172200 Sobic008G172200 Sobic003G107900--Sobic008G172200 Sobic002G341200 Sobic002G341200 Sobic003G107900--Sobic002G341200 Sobic004G189700 Sobic004G189700 Sobic003G107900--Sobic004G189700 Sobic006G073100 Sobic006G073100 Sobic003G107900--Sobic006G073100 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic004G085300 Sobic004G085300 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic002G223300--Sobic007G046900 Sobic004G285000 Sobic004G285000 Sobic002G223300--Sobic004G285000 Sobic002G223300--Sobic006G210200 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800 Sobic001G499200 Sobic001G499200 Sobic001G372900--Sobic001G499200 Sobic001G296100 Sobic001G296100 Sobic001G372900--Sobic001G296100 Sobic003G077500 Sobic003G077500 Sobic001G372900--Sobic003G077500 Sobic006G081500 Sobic006G081500 Sobic001G372900--Sobic006G081500 Sobic001G157100 Sobic001G157100 Sobic001G372900--Sobic001G157100 Sobic001G372900--Sobic006G084300 Sobic001G540700 Sobic001G540700 Sobic001G372900--Sobic001G540700 Sobic001G372900--Sobic008G172200 Sobic001G372900--Sobic002G334600 Sobic002G177500 Sobic002G177500 Sobic010G063566--Sobic002G177500 Sobic002G256800 Sobic002G256800 Sobic010G063566--Sobic002G256800 Sobic010G063566--Sobic001G268700 Sobic006G111200 Sobic006G111200 Sobic010G063566--Sobic006G111200 Sobic001G453500 Sobic001G453500 Sobic010G063566--Sobic001G453500 Sobic010G063566--Sobic002G339800 Sobic001G168100 Sobic001G168100 Sobic010G063566--Sobic001G168100 Sobic010G063566--Sobic002G223300 Sobic003G223500 Sobic003G223500 Sobic010G063566--Sobic003G223500 Sobic007G182600 Sobic007G182600 Sobic008G100400--Sobic007G182600 Sobic001G040600 Sobic001G040600 Sobic008G100400--Sobic001G040600 Sobic003G336500 Sobic003G336500 Sobic008G100400--Sobic003G336500 Sobic010G157700 Sobic010G157700 Sobic008G100400--Sobic010G157700 Sobic008G147400 Sobic008G147400 Sobic008G100400--Sobic008G147400 Sobic009G096100 Sobic009G096100 Sobic008G100400--Sobic009G096100 Sobic001G081300 Sobic001G081300 Sobic008G100400--Sobic001G081300 Sobic010G099300 Sobic010G099300 Sobic008G100400--Sobic010G099300 Sobic009G148200 Sobic009G148200 Sobic008G100400--Sobic009G148200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.