Gene annotation
Transcriptome id Sobic.010G221200.1
Synonym Sb10g026660
Functional annotation neurochondrin family protein, putative, expressed
UniProt A0A194YKT4
Pfam PF05536
Panther DB PTHR13109
NCBI CDD KOG2611; Neurochondrin/leucine-rich protein (Neurochondrin)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32050 : neurochondrin family protein
RAP-DB (Rice) LOC_Os02g55530.1 : neurochondrin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022490
Brachypodium KQK01178
Barley HORVU6Hr1G086480.7 , HORVU6Hr1G086480.8 , HORVU6Hr1G086480.9 , HORVU6Hr1G086480.2 , HORVU6Hr1G086480.3 , HORVU6Hr1G086480.1 , HORVU6Hr1G086480.6 , HORVU6Hr1G086480.4 , HORVU6Hr1G086480.5 , HORVU6Hr1G024980.2 , HORVU6Hr1G024980.1
Wheat TraesCS6D02G345800 , TraesCS6D02G345800 , TraesCS6A02G362500 , TraesCS6B02G396100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G116500 expressed protein -
2 Sobic.001G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
3 Sobic.005G120600 Highest expression level in embryo(PubMedID : 27501690)@OsSPL19 - SBP-box gene family member, expressed -
4 Sobic.003G102700 exostosin family protein, putative, expressed -
5 Sobic.010G013500 growth-regulating factor, putative, expressed -
6 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
7 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
8 Sobic.002G416150 - -
9 Sobic.009G028100 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
10 Sobic.002G378600 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
11 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
12 Sobic.002G256800 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
13 Sobic.010G257000 two-component response regulator, putative, expressed -
14 Sobic.004G148900 ankyrin, putative, expressed -
15 Sobic.008G048966 - -
16 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C
17 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
18 Sobic.007G225700 phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed K01626: E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
19 Sobic.008G090400 - -
20 Sobic.006G126600 Trihelix Family(PubMedID : 24864043)@MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic010G221200 Sobic010G221200 Sobic004G116500 Sobic004G116500 Sobic010G221200--Sobic004G116500 Sobic001G268700 Sobic001G268700 Sobic010G221200--Sobic001G268700 Sobic005G120600 Sobic005G120600 Sobic010G221200--Sobic005G120600 Sobic003G102700 Sobic003G102700 Sobic010G221200--Sobic003G102700 Sobic010G013500 Sobic010G013500 Sobic010G221200--Sobic010G013500 Sobic001G372900 Sobic001G372900 Sobic010G221200--Sobic001G372900 Sobic006G084300 Sobic006G084300 Sobic010G221200--Sobic006G084300 Sobic002G416150 Sobic002G416150 Sobic010G221200--Sobic002G416150 Sobic009G028100 Sobic009G028100 Sobic010G221200--Sobic009G028100 Sobic004G116500--Sobic005G120600 Sobic004G116500--Sobic010G221200 Sobic004G248700 Sobic004G248700 Sobic004G116500--Sobic004G248700 Sobic004G116500--Sobic002G416150 Sobic004G116500--Sobic001G268700 Sobic004G289500 Sobic004G289500 Sobic004G116500--Sobic004G289500 Sobic006G269600 Sobic006G269600 Sobic004G116500--Sobic006G269600 Sobic009G155900 Sobic009G155900 Sobic004G116500--Sobic009G155900 Sobic002G050500 Sobic002G050500 Sobic004G116500--Sobic002G050500 Sobic001G268700--Sobic002G050500 Sobic001G268700--Sobic010G221200 Sobic001G268700--Sobic005G120600 Sobic001G268700--Sobic004G116500 Sobic003G107900 Sobic003G107900 Sobic001G268700--Sobic003G107900 Sobic002G223300 Sobic002G223300 Sobic001G268700--Sobic002G223300 Sobic001G268700--Sobic001G372900 Sobic010G063566 Sobic010G063566 Sobic001G268700--Sobic010G063566 Sobic008G100400 Sobic008G100400 Sobic001G268700--Sobic008G100400 Sobic005G120600--Sobic004G116500 Sobic005G120600--Sobic001G268700 Sobic005G120600--Sobic010G221200 Sobic004G141000 Sobic004G141000 Sobic005G120600--Sobic004G141000 Sobic005G120600--Sobic002G416150 Sobic005G120600--Sobic010G013500 Sobic005G139300 Sobic005G139300 Sobic005G120600--Sobic005G139300 Sobic002G002500 Sobic002G002500 Sobic005G120600--Sobic002G002500 Sobic004G286250 Sobic004G286250 Sobic005G120600--Sobic004G286250 Sobic001G199500 Sobic001G199500 Sobic003G102700--Sobic001G199500 Sobic005G102800 Sobic005G102800 Sobic003G102700--Sobic005G102800 Sobic003G102700--Sobic006G084300 Sobic002G187600 Sobic002G187600 Sobic003G102700--Sobic002G187600 Sobic002G168000 Sobic002G168000 Sobic003G102700--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic003G102700--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic003G102700--Sobic003G024000 Sobic009G188900 Sobic009G188900 Sobic003G102700--Sobic009G188900 Sobic002G367200 Sobic002G367200 Sobic003G102700--Sobic002G367200 Sobic009G000600 Sobic009G000600 Sobic010G013500--Sobic009G000600 Sobic004G199200 Sobic004G199200 Sobic010G013500--Sobic004G199200 Sobic006G022400 Sobic006G022400 Sobic010G013500--Sobic006G022400 Sobic010G013500--Sobic002G223300 Sobic002G284400 Sobic002G284400 Sobic010G013500--Sobic002G284400 Sobic001G290500 Sobic001G290500 Sobic010G013500--Sobic001G290500 Sobic010G013500--Sobic001G372900 Sobic010G013500--Sobic006G281900 Sobic010G013500--Sobic005G120600 Sobic001G499200 Sobic001G499200 Sobic001G372900--Sobic001G499200 Sobic001G296100 Sobic001G296100 Sobic001G372900--Sobic001G296100 Sobic003G077500 Sobic003G077500 Sobic001G372900--Sobic003G077500 Sobic006G081500 Sobic006G081500 Sobic001G372900--Sobic006G081500 Sobic001G157100 Sobic001G157100 Sobic001G372900--Sobic001G157100 Sobic001G372900--Sobic006G084300 Sobic001G540700 Sobic001G540700 Sobic001G372900--Sobic001G540700 Sobic008G172200 Sobic008G172200 Sobic001G372900--Sobic008G172200 Sobic002G334600 Sobic002G334600 Sobic001G372900--Sobic002G334600 Sobic004G315700 Sobic004G315700 Sobic006G084300--Sobic004G315700 Sobic006G084300--Sobic001G199500 Sobic008G090000 Sobic008G090000 Sobic006G084300--Sobic008G090000 Sobic009G212100 Sobic009G212100 Sobic006G084300--Sobic009G212100 Sobic006G071628 Sobic006G071628 Sobic006G084300--Sobic006G071628 Sobic001G425700 Sobic001G425700 Sobic006G084300--Sobic001G425700 Sobic003G104100 Sobic003G104100 Sobic006G084300--Sobic003G104100 Sobic006G084300--Sobic006G281900 Sobic006G084300--Sobic003G024000 Sobic002G416150--Sobic004G116500 Sobic006G088400 Sobic006G088400 Sobic002G416150--Sobic006G088400 Sobic001G264201 Sobic001G264201 Sobic002G416150--Sobic001G264201 Sobic002G416150--Sobic005G120600 Sobic002G416150--Sobic005G139300 Sobic004G353400 Sobic004G353400 Sobic002G416150--Sobic004G353400 Sobic009G224300 Sobic009G224300 Sobic002G416150--Sobic009G224300 Sobic002G416150--Sobic010G221200 Sobic002G416150--Sobic009G155900 Sobic009G028100--Sobic002G367200 Sobic003G147500 Sobic003G147500 Sobic009G028100--Sobic003G147500 Sobic009G012600 Sobic009G012600 Sobic009G028100--Sobic009G012600 Sobic001G460100 Sobic001G460100 Sobic009G028100--Sobic001G460100 Sobic002G238500 Sobic002G238500 Sobic009G028100--Sobic002G238500 Sobic003G122800 Sobic003G122800 Sobic009G028100--Sobic003G122800 Sobic007G050800 Sobic007G050800 Sobic009G028100--Sobic007G050800 Sobic004G291200 Sobic004G291200 Sobic009G028100--Sobic004G291200 Sobic002G158500 Sobic002G158500 Sobic009G028100--Sobic002G158500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.