Gene annotation
Transcriptome id Sobic.007G225700.1
Synonym Sb07g029080
Functional annotation phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed
UniProt C5YJQ4
Pfam PF01474
Panther DB PTHR21337 PTHR21337:SF4
NCBI CDD -
KEGG Orthology K01626; E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
Gene Ontology GO:0009073; aromatic amino acid family biosynthetic process GO:00038493-deoxy-7-phosphoheptulonate synthase activity


Orthologs (automatic annotation)
TAIR AT1G22410 : Class-II DAHP synthetase family protein
RAP-DB (Rice) LOC_Os08g37790.1 : phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a033710
Brachypodium KQK15222 , KQJ98726 , KQK15223
Barley -
Wheat TraesCS2A02G163600 , TraesCS2D02G170400 , TraesCS2B02G189300
Populus PNT35385 , PNT35384 , PNT35387 , PNT35386 , PNT35388


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G256800 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
2 Sobic.002G155100 bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed K12524: bifunctional aspartokinase / homoserine dehydrogenase 1
3 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
4 Sobic.010G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
5 Sobic.006G193500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.003G102700 exostosin family protein, putative, expressed -
7 Sobic.003G223000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.006G237000 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III
9 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.001G165801 - -
11 Sobic.003G333700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine synthase, chloroplast precursor, putative, expressed K01738: cysteine synthase
12 Sobic.006G237600 expressed protein -
13 Sobic.008G162100 MazG nucleotide pyrophosphohydrolase domain containing protein, expressed K11755: phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase
14 Sobic.008G097600 cyclin-T1-4, putative, expressed K15188: cyclin T
15 Sobic.010G221200 neurochondrin family protein, putative, expressed -
16 Sobic.004G192500 protein kinase PKN/PRK1, effector, putative, expressed -
17 Sobic.008G030900 LTPL10 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.001G434700 phosphomevalonate kinase, putative, expressed K00938: E2.7.4.2, phosphomevalonate kinase
19 Sobic.005G017500 GRAS family transcription factor domain containing protein, expressed -
20 Sobic.010G063566 - K11111: TERF2, telomeric repeat-binding factor 2


Gene co-expression network
sample Sobic007G225700 Sobic007G225700 Sobic002G256800 Sobic002G256800 Sobic007G225700--Sobic002G256800 Sobic002G155100 Sobic002G155100 Sobic007G225700--Sobic002G155100 Sobic005G102800 Sobic005G102800 Sobic007G225700--Sobic005G102800 Sobic010G155600 Sobic010G155600 Sobic007G225700--Sobic010G155600 Sobic006G193500 Sobic006G193500 Sobic007G225700--Sobic006G193500 Sobic003G102700 Sobic003G102700 Sobic007G225700--Sobic003G102700 Sobic003G223000 Sobic003G223000 Sobic007G225700--Sobic003G223000 Sobic006G237000 Sobic006G237000 Sobic007G225700--Sobic006G237000 Sobic008G100400 Sobic008G100400 Sobic007G225700--Sobic008G100400 Sobic002G256800--Sobic007G225700 Sobic003G336500 Sobic003G336500 Sobic002G256800--Sobic003G336500 Sobic010G063566 Sobic010G063566 Sobic002G256800--Sobic010G063566 Sobic002G256800--Sobic002G155100 Sobic007G092200 Sobic007G092200 Sobic002G256800--Sobic007G092200 Sobic002G256800--Sobic008G100400 Sobic001G081900 Sobic001G081900 Sobic002G256800--Sobic001G081900 Sobic003G408300 Sobic003G408300 Sobic002G256800--Sobic003G408300 Sobic001G199500 Sobic001G199500 Sobic002G256800--Sobic001G199500 Sobic002G155100--Sobic006G193500 Sobic002G126800 Sobic002G126800 Sobic002G155100--Sobic002G126800 Sobic003G432300 Sobic003G432300 Sobic002G155100--Sobic003G432300 Sobic002G155100--Sobic006G237000 Sobic002G155100--Sobic003G102700 Sobic005G028100 Sobic005G028100 Sobic002G155100--Sobic005G028100 Sobic001G373000 Sobic001G373000 Sobic002G155100--Sobic001G373000 Sobic002G155100--Sobic001G199500 Sobic001G013300 Sobic001G013300 Sobic002G155100--Sobic001G013300 Sobic005G102800--Sobic003G102700 Sobic007G192200 Sobic007G192200 Sobic005G102800--Sobic007G192200 Sobic004G269100 Sobic004G269100 Sobic005G102800--Sobic004G269100 Sobic006G226000 Sobic006G226000 Sobic005G102800--Sobic006G226000 Sobic009G119800 Sobic009G119800 Sobic005G102800--Sobic009G119800 Sobic003G140800 Sobic003G140800 Sobic005G102800--Sobic003G140800 Sobic001G381000 Sobic001G381000 Sobic005G102800--Sobic001G381000 Sobic004G244200 Sobic004G244200 Sobic005G102800--Sobic004G244200 Sobic009G031800 Sobic009G031800 Sobic005G102800--Sobic009G031800 Sobic010G155600--Sobic006G237000 Sobic005G031000 Sobic005G031000 Sobic010G155600--Sobic005G031000 Sobic008G097600 Sobic008G097600 Sobic010G155600--Sobic008G097600 Sobic002G125800 Sobic002G125800 Sobic010G155600--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic010G155600--Sobic001G434700 Sobic004G275600 Sobic004G275600 Sobic010G155600--Sobic004G275600 Sobic001G537500 Sobic001G537500 Sobic010G155600--Sobic001G537500 Sobic004G356200 Sobic004G356200 Sobic010G155600--Sobic004G356200 Sobic004G037200 Sobic004G037200 Sobic010G155600--Sobic004G037200 Sobic006G193500--Sobic002G155100 Sobic008G101900 Sobic008G101900 Sobic006G193500--Sobic008G101900 Sobic006G193500--Sobic001G199500 Sobic006G193500--Sobic003G102700 Sobic010G141600 Sobic010G141600 Sobic006G193500--Sobic010G141600 Sobic006G193500--Sobic003G223000 Sobic005G013300 Sobic005G013300 Sobic006G193500--Sobic005G013300 Sobic006G084300 Sobic006G084300 Sobic006G193500--Sobic006G084300 Sobic001G425700 Sobic001G425700 Sobic006G193500--Sobic001G425700 Sobic003G102700--Sobic001G199500 Sobic003G102700--Sobic005G102800 Sobic003G102700--Sobic006G084300 Sobic002G187600 Sobic002G187600 Sobic003G102700--Sobic002G187600 Sobic002G168000 Sobic002G168000 Sobic003G102700--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic003G102700--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic003G102700--Sobic003G024000 Sobic009G188900 Sobic009G188900 Sobic003G102700--Sobic009G188900 Sobic002G367200 Sobic002G367200 Sobic003G102700--Sobic002G367200 Sobic003G333700 Sobic003G333700 Sobic003G223000--Sobic003G333700 Sobic002G078000 Sobic002G078000 Sobic003G223000--Sobic002G078000 Sobic003G223000--Sobic008G101900 Sobic009G002900 Sobic009G002900 Sobic003G223000--Sobic009G002900 Sobic009G177200 Sobic009G177200 Sobic003G223000--Sobic009G177200 Sobic009G231100 Sobic009G231100 Sobic003G223000--Sobic009G231100 Sobic001G165801 Sobic001G165801 Sobic003G223000--Sobic001G165801 Sobic001G104300 Sobic001G104300 Sobic003G223000--Sobic001G104300 Sobic002G272400 Sobic002G272400 Sobic003G223000--Sobic002G272400 Sobic006G237000--Sobic002G125800 Sobic006G237000--Sobic005G031000 Sobic001G200200 Sobic001G200200 Sobic006G237000--Sobic001G200200 Sobic006G237000--Sobic010G155600 Sobic010G003900 Sobic010G003900 Sobic006G237000--Sobic010G003900 Sobic006G237000--Sobic002G155100 Sobic008G059900 Sobic008G059900 Sobic006G237000--Sobic008G059900 Sobic005G098800 Sobic005G098800 Sobic006G237000--Sobic005G098800 Sobic006G237000--Sobic001G537500 Sobic007G182600 Sobic007G182600 Sobic008G100400--Sobic007G182600 Sobic001G040600 Sobic001G040600 Sobic008G100400--Sobic001G040600 Sobic008G100400--Sobic003G336500 Sobic010G157700 Sobic010G157700 Sobic008G100400--Sobic010G157700 Sobic008G147400 Sobic008G147400 Sobic008G100400--Sobic008G147400 Sobic009G096100 Sobic009G096100 Sobic008G100400--Sobic009G096100 Sobic001G081300 Sobic001G081300 Sobic008G100400--Sobic001G081300 Sobic010G099300 Sobic010G099300 Sobic008G100400--Sobic010G099300 Sobic009G148200 Sobic009G148200 Sobic008G100400--Sobic009G148200
Octagon: transcription factors


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