Gene annotation
Transcriptome id Sobic.005G102800.1
Synonym scpl42, Sb05g009120
Functional annotation OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed
UniProt C5Y1W9
Pfam PF00450
Panther DB PTHR11802 PTHR11802:SF20
NCBI CDD -
KEGG Orthology K16297; serine carboxypeptidase-like clade II
Gene Ontology GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity


Orthologs (automatic annotation)
TAIR AT5G42240 : serine carboxypeptidase-like 42
RAP-DB (Rice) LOC_Os11g10750.1 : OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a012718 , Zm00025a029640
Brachypodium KQJ88968 , PNT69782 , PNT69783
Barley HORVU4Hr1G016730.19 , HORVU4Hr1G016730.18 , HORVU4Hr1G016730.11 , HORVU4Hr1G016730.9 , HORVU4Hr1G016730.8 , HORVU4Hr1G016730.3 , HORVU4Hr1G016730.2 , HORVU4Hr1G016730.1 , HORVU4Hr1G016730.7 , HORVU4Hr1G016730.6 , HORVU4Hr1G016730.5 , HORVU4Hr1G016730.4 , HORVU4Hr1G016730.22 , HORVU4Hr1G016730.23 , HORVU4Hr1G016730.20 , HORVU4Hr1G016730.21 , HORVU4Hr1G016730.24 , HORVU4Hr1G016730.25 , HORVU4Hr1G016730.13 , HORVU4Hr1G016730.12 , HORVU4Hr1G016730.10 , HORVU4Hr1G016730.17 , HORVU4Hr1G016730.16 , HORVU4Hr1G016730.15 , HORVU4Hr1G016730.14
Wheat TraesCS4D02G264700 , TraesCS4D02G103600 , TraesCS4A02G043900 , TraesCS4A02G202600 , TraesCS4D02G264700 , TraesCS4B02G264700 , TraesCS4B02G106700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G102700 exostosin family protein, putative, expressed -
2 Sobic.007G192200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
4 Sobic.006G226000 expressed protein -
5 Sobic.009G119800 GASR5 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
6 Sobic.003G140800 expressed protein -
7 Sobic.001G381000 - -
8 Sobic.004G244200 expressed protein -
9 Sobic.009G031800 - -
10 Sobic.004G222300 DEF7 - Defensin and Defensin-like DEFL family, expressed -
11 Sobic.004G215100 expressed protein -
12 Sobic.010G257000 two-component response regulator, putative, expressed -
13 Sobic.003G251700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
14 Sobic.002G366300 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.004G291200 - -
16 Sobic.010G175000 expressed protein -
17 Sobic.006G083900 PHD-finger domain containing protein, expressed -
18 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
19 Sobic.008G165266 - -
20 Sobic.008G175400 U-box domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic005G102800 Sobic005G102800 Sobic003G102700 Sobic003G102700 Sobic005G102800--Sobic003G102700 Sobic007G192200 Sobic007G192200 Sobic005G102800--Sobic007G192200 Sobic004G269100 Sobic004G269100 Sobic005G102800--Sobic004G269100 Sobic006G226000 Sobic006G226000 Sobic005G102800--Sobic006G226000 Sobic009G119800 Sobic009G119800 Sobic005G102800--Sobic009G119800 Sobic003G140800 Sobic003G140800 Sobic005G102800--Sobic003G140800 Sobic001G381000 Sobic001G381000 Sobic005G102800--Sobic001G381000 Sobic004G244200 Sobic004G244200 Sobic005G102800--Sobic004G244200 Sobic009G031800 Sobic009G031800 Sobic005G102800--Sobic009G031800 Sobic001G199500 Sobic001G199500 Sobic003G102700--Sobic001G199500 Sobic003G102700--Sobic005G102800 Sobic006G084300 Sobic006G084300 Sobic003G102700--Sobic006G084300 Sobic002G187600 Sobic002G187600 Sobic003G102700--Sobic002G187600 Sobic002G168000 Sobic002G168000 Sobic003G102700--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic003G102700--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic003G102700--Sobic003G024000 Sobic009G188900 Sobic009G188900 Sobic003G102700--Sobic009G188900 Sobic002G367200 Sobic002G367200 Sobic003G102700--Sobic002G367200 Sobic005G036200 Sobic005G036200 Sobic007G192200--Sobic005G036200 Sobic006G135800 Sobic006G135800 Sobic007G192200--Sobic006G135800 Sobic007G192200--Sobic003G140800 Sobic009G002200 Sobic009G002200 Sobic007G192200--Sobic009G002200 Sobic007G192200--Sobic006G226000 Sobic009G012600 Sobic009G012600 Sobic007G192200--Sobic009G012600 Sobic004G242200 Sobic004G242200 Sobic007G192200--Sobic004G242200 Sobic007G192200--Sobic005G102800 Sobic007G192200--Sobic009G031800 Sobic008G052300 Sobic008G052300 Sobic004G269100--Sobic008G052300 Sobic002G259200 Sobic002G259200 Sobic004G269100--Sobic002G259200 Sobic003G251700 Sobic003G251700 Sobic004G269100--Sobic003G251700 Sobic005G092700 Sobic005G092700 Sobic004G269100--Sobic005G092700 Sobic005G153000 Sobic005G153000 Sobic004G269100--Sobic005G153000 Sobic001G461800 Sobic001G461800 Sobic004G269100--Sobic001G461800 Sobic003G250000 Sobic003G250000 Sobic004G269100--Sobic003G250000 Sobic003G222800 Sobic003G222800 Sobic004G269100--Sobic003G222800 Sobic003G055800 Sobic003G055800 Sobic004G269100--Sobic003G055800 Sobic006G226000--Sobic009G031800 Sobic007G160400 Sobic007G160400 Sobic006G226000--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic006G226000--Sobic010G037901 Sobic002G055800 Sobic002G055800 Sobic006G226000--Sobic002G055800 Sobic002G256900 Sobic002G256900 Sobic006G226000--Sobic002G256900 Sobic004G123200 Sobic004G123200 Sobic006G226000--Sobic004G123200 Sobic003G086800 Sobic003G086800 Sobic006G226000--Sobic003G086800 Sobic002G240000 Sobic002G240000 Sobic006G226000--Sobic002G240000 Sobic001G136400 Sobic001G136400 Sobic006G226000--Sobic001G136400 Sobic009G119800--Sobic001G381000 Sobic009G119800--Sobic002G240000 Sobic001G534200 Sobic001G534200 Sobic009G119800--Sobic001G534200 Sobic008G018100 Sobic008G018100 Sobic009G119800--Sobic008G018100 Sobic006G083900 Sobic006G083900 Sobic009G119800--Sobic006G083900 Sobic005G126701 Sobic005G126701 Sobic009G119800--Sobic005G126701 Sobic001G254800 Sobic001G254800 Sobic009G119800--Sobic001G254800 Sobic005G021000 Sobic005G021000 Sobic009G119800--Sobic005G021000 Sobic006G234433 Sobic006G234433 Sobic009G119800--Sobic006G234433 Sobic010G074940 Sobic010G074940 Sobic003G140800--Sobic010G074940 Sobic001G544400 Sobic001G544400 Sobic003G140800--Sobic001G544400 Sobic002G393100 Sobic002G393100 Sobic003G140800--Sobic002G393100 Sobic003G140800--Sobic001G136400 Sobic001G380800 Sobic001G380800 Sobic003G140800--Sobic001G380800 Sobic004G164800 Sobic004G164800 Sobic003G140800--Sobic004G164800 Sobic005G147600 Sobic005G147600 Sobic003G140800--Sobic005G147600 Sobic004G301800 Sobic004G301800 Sobic003G140800--Sobic004G301800 Sobic001G208500 Sobic001G208500 Sobic003G140800--Sobic001G208500 Sobic001G381000--Sobic001G534200 Sobic003G372600 Sobic003G372600 Sobic001G381000--Sobic003G372600 Sobic001G381000--Sobic001G208500 Sobic001G166900 Sobic001G166900 Sobic001G381000--Sobic001G166900 Sobic006G167700 Sobic006G167700 Sobic001G381000--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic001G381000--Sobic002G184700 Sobic001G344300 Sobic001G344300 Sobic001G381000--Sobic001G344300 Sobic009G103800 Sobic009G103800 Sobic001G381000--Sobic009G103800 Sobic001G381000--Sobic002G393100 Sobic004G244200--Sobic005G102800 Sobic006G237600 Sobic006G237600 Sobic004G244200--Sobic006G237600 Sobic004G248700 Sobic004G248700 Sobic004G244200--Sobic004G248700 Sobic005G047900 Sobic005G047900 Sobic004G244200--Sobic005G047900 Sobic004G244200--Sobic009G119800 Sobic009G155900 Sobic009G155900 Sobic004G244200--Sobic009G155900 Sobic003G434300 Sobic003G434300 Sobic004G244200--Sobic003G434300 Sobic004G057700 Sobic004G057700 Sobic004G244200--Sobic004G057700 Sobic004G244200--Sobic008G018100 Sobic009G031800--Sobic006G226000 Sobic009G031800--Sobic007G160400 Sobic009G031800--Sobic010G037901 Sobic009G012500 Sobic009G012500 Sobic009G031800--Sobic009G012500 Sobic009G031800--Sobic005G126701 Sobic001G254700 Sobic001G254700 Sobic009G031800--Sobic001G254700 Sobic009G031800--Sobic006G083900 Sobic007G025600 Sobic007G025600 Sobic009G031800--Sobic007G025600 Sobic009G031800--Sobic001G534200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.