Gene annotation
Transcriptome id Sobic.004G215100.1
Synonym Sb04g026030
Functional annotation expressed protein
UniProt C5XXN6
Pfam PF14383 PF14309
Panther DB PTHR21726 PTHR21726:SF44
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20240 : Protein of unknown function (DUF3741)
RAP-DB (Rice) LOC_Os02g40410.1 : expressed protein
MaizeGDB (Corn) Zm00025a021165
Brachypodium KQK00351 , KQK00352 , PNT69067 , PNT69066 , PNT69069 , PNT69068
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G215100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G251700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
2 Sobic.006G172000 pectinesterase, putative, expressed -
3 Sobic.004G115700 extra-large G-protein-related, putative, expressed -
4 Sobic.004G269100 ATROPGEF7/ROPGEF7, putative, expressed -
5 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.001G448000 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
7 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -
8 Sobic.002G378600 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
9 Sobic.010G106100 endoglucanase, putative, expressed -
10 Sobic.005G102800 OsSCP48 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
11 Sobic.004G139900 ATP binding, related, putative, expressed -
12 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
13 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
14 Sobic.005G092700 expressed protein -
15 Sobic.006G226000 expressed protein -
16 Sobic.008G052300 plant protein of unknown function DUF869 domain containing protein, expressed -
17 Sobic.006G255300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
18 Sobic.001G407100 PHD finger family protein, putative, expressed -
19 Sobic.003G102700 exostosin family protein, putative, expressed -
20 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -


Gene co-expression network
sample Sobic004G215100 Sobic004G215100 Sobic003G251700 Sobic003G251700 Sobic004G215100--Sobic003G251700 Sobic006G172000 Sobic006G172000 Sobic004G215100--Sobic006G172000 Sobic004G115700 Sobic004G115700 Sobic004G215100--Sobic004G115700 Sobic004G269100 Sobic004G269100 Sobic004G215100--Sobic004G269100 Sobic001G493100 Sobic001G493100 Sobic004G215100--Sobic001G493100 Sobic001G448000 Sobic001G448000 Sobic004G215100--Sobic001G448000 Sobic007G097100 Sobic007G097100 Sobic004G215100--Sobic007G097100 Sobic002G378600 Sobic002G378600 Sobic004G215100--Sobic002G378600 Sobic010G106100 Sobic010G106100 Sobic004G215100--Sobic010G106100 Sobic003G251700--Sobic006G172000 Sobic003G251700--Sobic004G269100 Sobic003G251700--Sobic004G215100 Sobic003G251700--Sobic001G493100 Sobic006G135800 Sobic006G135800 Sobic003G251700--Sobic006G135800 Sobic002G259200 Sobic002G259200 Sobic003G251700--Sobic002G259200 Sobic006G226000 Sobic006G226000 Sobic003G251700--Sobic006G226000 Sobic005G092700 Sobic005G092700 Sobic003G251700--Sobic005G092700 Sobic006G041700 Sobic006G041700 Sobic003G251700--Sobic006G041700 Sobic006G172000--Sobic001G493100 Sobic006G172000--Sobic003G251700 Sobic006G172000--Sobic006G135800 Sobic006G172000--Sobic006G041700 Sobic006G172000--Sobic007G097100 Sobic004G330200 Sobic004G330200 Sobic006G172000--Sobic004G330200 Sobic002G175200 Sobic002G175200 Sobic006G172000--Sobic002G175200 Sobic001G246600 Sobic001G246600 Sobic006G172000--Sobic001G246600 Sobic006G172000--Sobic006G226000 Sobic009G200000 Sobic009G200000 Sobic004G115700--Sobic009G200000 Sobic008G042200 Sobic008G042200 Sobic004G115700--Sobic008G042200 Sobic004G115700--Sobic005G092700 Sobic008G190000 Sobic008G190000 Sobic004G115700--Sobic008G190000 Sobic006G240900 Sobic006G240900 Sobic004G115700--Sobic006G240900 Sobic004G115700--Sobic010G106100 Sobic006G110850 Sobic006G110850 Sobic004G115700--Sobic006G110850 Sobic003G366000 Sobic003G366000 Sobic004G115700--Sobic003G366000 Sobic009G124800 Sobic009G124800 Sobic004G115700--Sobic009G124800 Sobic008G052300 Sobic008G052300 Sobic004G269100--Sobic008G052300 Sobic004G269100--Sobic002G259200 Sobic004G269100--Sobic003G251700 Sobic004G269100--Sobic005G092700 Sobic005G153000 Sobic005G153000 Sobic004G269100--Sobic005G153000 Sobic001G461800 Sobic001G461800 Sobic004G269100--Sobic001G461800 Sobic003G250000 Sobic003G250000 Sobic004G269100--Sobic003G250000 Sobic003G222800 Sobic003G222800 Sobic004G269100--Sobic003G222800 Sobic003G055800 Sobic003G055800 Sobic004G269100--Sobic003G055800 Sobic001G493100--Sobic006G172000 Sobic001G493100--Sobic006G135800 Sobic001G493100--Sobic006G226000 Sobic001G493100--Sobic006G041700 Sobic006G197400 Sobic006G197400 Sobic001G493100--Sobic006G197400 Sobic007G160400 Sobic007G160400 Sobic001G493100--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic001G493100--Sobic010G037901 Sobic003G086800 Sobic003G086800 Sobic001G493100--Sobic003G086800 Sobic009G031800 Sobic009G031800 Sobic001G493100--Sobic009G031800 Sobic004G139900 Sobic004G139900 Sobic001G448000--Sobic004G139900 Sobic001G448000--Sobic009G200000 Sobic001G448000--Sobic007G097100 Sobic001G448000--Sobic008G042200 Sobic001G448000--Sobic004G115700 Sobic001G448000--Sobic004G269100 Sobic001G448000--Sobic004G215100 Sobic008G123200 Sobic008G123200 Sobic001G448000--Sobic008G123200 Sobic001G448000--Sobic005G092700 Sobic007G097100--Sobic006G172000 Sobic001G320000 Sobic001G320000 Sobic007G097100--Sobic001G320000 Sobic007G097100--Sobic001G493100 Sobic004G142400 Sobic004G142400 Sobic007G097100--Sobic004G142400 Sobic007G097100--Sobic007G160400 Sobic007G097100--Sobic006G226000 Sobic003G350400 Sobic003G350400 Sobic007G097100--Sobic003G350400 Sobic007G097100--Sobic006G135800 Sobic007G097100--Sobic006G041700 Sobic009G224300 Sobic009G224300 Sobic002G378600--Sobic009G224300 Sobic003G102700 Sobic003G102700 Sobic002G378600--Sobic003G102700 Sobic002G378600--Sobic004G215100 Sobic002G378600--Sobic004G115700 Sobic004G286200 Sobic004G286200 Sobic002G378600--Sobic004G286200 Sobic006G084300 Sobic006G084300 Sobic002G378600--Sobic006G084300 Sobic002G378600--Sobic009G200000 Sobic001G268700 Sobic001G268700 Sobic002G378600--Sobic001G268700 Sobic002G367200 Sobic002G367200 Sobic002G378600--Sobic002G367200 Sobic010G106100--Sobic004G115700 Sobic010G106100--Sobic004G215100 Sobic010G106100--Sobic004G139900 Sobic010G106100--Sobic001G448000 Sobic010G106100--Sobic008G042200 Sobic010G106100--Sobic009G200000 Sobic010G106100--Sobic003G350400 Sobic010G106100--Sobic008G190000 Sobic004G311600 Sobic004G311600 Sobic010G106100--Sobic004G311600
Octagon: transcription factors


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