Gene annotation
Transcriptome id Sobic.006G172000.2,Sobic.006G172000.1
Synonym Sb06g024730
Functional annotation pectinesterase, putative, expressed
UniProt A0A1Z5REC5 , C5YDI8
Pfam PF01095
Panther DB PTHR31321 PTHR31321:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005618; cell wall


Orthologs (automatic annotation)
TAIR AT5G47500 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os04g46740.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a010294
Brachypodium KQJ83962
Barley HORVU2Hr1G097380.3 , HORVU2Hr1G097380.2 , HORVU2Hr1G097380.1 , HORVU2Hr1G097380.5 , HORVU2Hr1G097380.4
Wheat TraesCS2B02G431700 , TraesCS2D02G409900 , TraesCS2A02G412600
Populus -


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cDNA sequences
Sobic.006G172000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.003G251700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
3 Sobic.006G135800 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.006G041700 sex determination protein tasselseed-2, putative, expressed -
5 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -
6 Sobic.004G330200 "TGW6(Ortholog in rice:Ishimaru et al., 2013)"(PubMedID : 31659893)@SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
7 Sobic.002G175200 A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
8 Sobic.001G246600 MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.006G226000 expressed protein -
10 Sobic.007G160400 ZF-HD homeobox protein, putative, expressed -
11 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
12 Sobic.004G142400 ATP-binding region, ATPase-like domain containing protein, expressed -
13 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
14 Sobic.009G031800 - -
15 Sobic.004G215100 expressed protein -
16 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -
17 Sobic.001G148450 - -
18 Sobic.001G320000 OsSub61 - Putative Subtilisin homologue, expressed -
19 Sobic.010G037901 - -
20 Sobic.005G126701 - -


Gene co-expression network
sample Sobic006G172000 Sobic006G172000 Sobic001G493100 Sobic001G493100 Sobic006G172000--Sobic001G493100 Sobic003G251700 Sobic003G251700 Sobic006G172000--Sobic003G251700 Sobic006G135800 Sobic006G135800 Sobic006G172000--Sobic006G135800 Sobic006G041700 Sobic006G041700 Sobic006G172000--Sobic006G041700 Sobic007G097100 Sobic007G097100 Sobic006G172000--Sobic007G097100 Sobic004G330200 Sobic004G330200 Sobic006G172000--Sobic004G330200 Sobic002G175200 Sobic002G175200 Sobic006G172000--Sobic002G175200 Sobic001G246600 Sobic001G246600 Sobic006G172000--Sobic001G246600 Sobic006G226000 Sobic006G226000 Sobic006G172000--Sobic006G226000 Sobic001G493100--Sobic006G172000 Sobic001G493100--Sobic006G135800 Sobic001G493100--Sobic006G226000 Sobic001G493100--Sobic006G041700 Sobic006G197400 Sobic006G197400 Sobic001G493100--Sobic006G197400 Sobic007G160400 Sobic007G160400 Sobic001G493100--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic001G493100--Sobic010G037901 Sobic003G086800 Sobic003G086800 Sobic001G493100--Sobic003G086800 Sobic009G031800 Sobic009G031800 Sobic001G493100--Sobic009G031800 Sobic003G251700--Sobic006G172000 Sobic004G269100 Sobic004G269100 Sobic003G251700--Sobic004G269100 Sobic004G215100 Sobic004G215100 Sobic003G251700--Sobic004G215100 Sobic003G251700--Sobic001G493100 Sobic003G251700--Sobic006G135800 Sobic002G259200 Sobic002G259200 Sobic003G251700--Sobic002G259200 Sobic003G251700--Sobic006G226000 Sobic005G092700 Sobic005G092700 Sobic003G251700--Sobic005G092700 Sobic003G251700--Sobic006G041700 Sobic006G135800--Sobic001G493100 Sobic006G135800--Sobic010G037901 Sobic006G135800--Sobic006G226000 Sobic006G135800--Sobic006G172000 Sobic009G002200 Sobic009G002200 Sobic006G135800--Sobic009G002200 Sobic005G153000 Sobic005G153000 Sobic006G135800--Sobic005G153000 Sobic007G192200 Sobic007G192200 Sobic006G135800--Sobic007G192200 Sobic006G135800--Sobic009G031800 Sobic006G135800--Sobic007G160400 Sobic006G041700--Sobic001G493100 Sobic006G041700--Sobic006G172000 Sobic006G041700--Sobic006G197400 Sobic006G041700--Sobic003G086800 Sobic006G041700--Sobic001G246600 Sobic006G041700--Sobic002G175200 Sobic006G041700--Sobic004G330200 Sobic003G350400 Sobic003G350400 Sobic006G041700--Sobic003G350400 Sobic006G041700--Sobic002G259200 Sobic007G097100--Sobic006G172000 Sobic001G320000 Sobic001G320000 Sobic007G097100--Sobic001G320000 Sobic007G097100--Sobic001G493100 Sobic004G142400 Sobic004G142400 Sobic007G097100--Sobic004G142400 Sobic007G097100--Sobic007G160400 Sobic007G097100--Sobic006G226000 Sobic007G097100--Sobic003G350400 Sobic007G097100--Sobic006G135800 Sobic007G097100--Sobic006G041700 Sobic004G330200--Sobic002G175200 Sobic004G330200--Sobic001G246600 Sobic004G330200--Sobic006G172000 Sobic001G068132 Sobic001G068132 Sobic004G330200--Sobic001G068132 Sobic004G330200--Sobic001G493100 Sobic001G276800 Sobic001G276800 Sobic004G330200--Sobic001G276800 Sobic004G330200--Sobic003G086800 Sobic003G384600 Sobic003G384600 Sobic004G330200--Sobic003G384600 Sobic004G330200--Sobic007G160400 Sobic002G175200--Sobic002G175200 Sobic002G175200--Sobic001G246600 Sobic002G175200--Sobic006G172000 Sobic002G175200--Sobic001G068132 Sobic002G175200--Sobic001G493100 Sobic002G175200--Sobic001G276800 Sobic002G175200--Sobic003G086800 Sobic002G175200--Sobic003G384600 Sobic002G175200--Sobic007G160400 Sobic001G246600--Sobic002G175200 Sobic001G246600--Sobic004G330200 Sobic001G246600--Sobic006G172000 Sobic001G246600--Sobic001G068132 Sobic001G246600--Sobic001G493100 Sobic001G246600--Sobic001G276800 Sobic001G246600--Sobic003G086800 Sobic001G246600--Sobic003G384600 Sobic001G246600--Sobic007G160400 Sobic006G226000--Sobic009G031800 Sobic006G226000--Sobic007G160400 Sobic006G226000--Sobic010G037901 Sobic002G055800 Sobic002G055800 Sobic006G226000--Sobic002G055800 Sobic002G256900 Sobic002G256900 Sobic006G226000--Sobic002G256900 Sobic004G123200 Sobic004G123200 Sobic006G226000--Sobic004G123200 Sobic006G226000--Sobic003G086800 Sobic002G240000 Sobic002G240000 Sobic006G226000--Sobic002G240000 Sobic001G136400 Sobic001G136400 Sobic006G226000--Sobic001G136400
Octagon: transcription factors


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