Gene annotation
Transcriptome id Sobic.004G330200.1
Synonym Sb04g035910
Functional annotation "TGW6(Ortholog in rice:Ishimaru et al., 2013)" (PubMedID : 31659893)
SMP-30/Gluconolaconase/LRE-like region containing protein, expressed
UniProt C5XUG4
Pfam PF03088
Panther DB PTHR10426 PTHR10426:SF28
NCBI CDD KOG1520; Predicted alkaloid synthase/Surface mucin Hemomucin
KEGG Orthology -
Gene Ontology GO:0016844; strictosidine synthase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT3G57030 : Calcium-dependent phosphotriesterase superfamily protein
RAP-DB (Rice) LOC_Os06g41850.1 : SMP-30/Gluconolaconase/LRE-like region containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK21204 , KQK21164 , KQK10870 , KQJ84488
Barley HORVU7Hr1G028550.2 , HORVU5Hr1G091230.1 , HORVU2Hr1G013460.2 , HORVU2Hr1G013460.1 , HORVU2Hr1G012970.4 , HORVU2Hr1G012970.3 , HORVU2Hr1G012970.2 , HORVU7Hr1G028580.1 , HORVU6Hr1G026020.2 , HORVU6Hr1G026020.3 , HORVU6Hr1G026020.1
Wheat TraesCS2D02G076200 , TraesCS2D02G076000 , TraesCS2D02G076300 , TraesCS7D02G140600 , TraesCS2A02G078000 , TraesCS2A02G260200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G175200 A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
2 Sobic.001G246600 MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
3 Sobic.006G172000 pectinesterase, putative, expressed -
4 Sobic.001G068132 - -
5 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.001G276800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
7 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
8 Sobic.003G384600 expressed protein -
9 Sobic.007G160400 ZF-HD homeobox protein, putative, expressed -
10 Sobic.006G255300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
11 Sobic.004G142400 ATP-binding region, ATPase-like domain containing protein, expressed -
12 Sobic.006G041700 sex determination protein tasselseed-2, putative, expressed -
13 Sobic.005G126701 - -
14 Sobic.003G350400 thaumatin, putative, expressed -
15 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -
16 Sobic.006G273150 - -
17 Sobic.001G336200 "Grain Length3.2(Ortholog in rice:Adamski et al., 2009(PubMedID : 31659842)@cytochrome P450, putative, expressed -
18 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
19 Sobic.006G226000 expressed protein -
20 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -


Gene co-expression network
sample Sobic004G330200 Sobic004G330200 Sobic002G175200 Sobic002G175200 Sobic004G330200--Sobic002G175200 Sobic001G246600 Sobic001G246600 Sobic004G330200--Sobic001G246600 Sobic006G172000 Sobic006G172000 Sobic004G330200--Sobic006G172000 Sobic001G068132 Sobic001G068132 Sobic004G330200--Sobic001G068132 Sobic001G493100 Sobic001G493100 Sobic004G330200--Sobic001G493100 Sobic001G276800 Sobic001G276800 Sobic004G330200--Sobic001G276800 Sobic003G086800 Sobic003G086800 Sobic004G330200--Sobic003G086800 Sobic003G384600 Sobic003G384600 Sobic004G330200--Sobic003G384600 Sobic007G160400 Sobic007G160400 Sobic004G330200--Sobic007G160400 Sobic002G175200--Sobic002G175200 Sobic002G175200--Sobic001G246600 Sobic002G175200--Sobic006G172000 Sobic002G175200--Sobic001G068132 Sobic002G175200--Sobic001G493100 Sobic002G175200--Sobic001G276800 Sobic002G175200--Sobic003G086800 Sobic002G175200--Sobic003G384600 Sobic002G175200--Sobic007G160400 Sobic001G246600--Sobic002G175200 Sobic001G246600--Sobic004G330200 Sobic001G246600--Sobic006G172000 Sobic001G246600--Sobic001G068132 Sobic001G246600--Sobic001G493100 Sobic001G246600--Sobic001G276800 Sobic001G246600--Sobic003G086800 Sobic001G246600--Sobic003G384600 Sobic001G246600--Sobic007G160400 Sobic006G172000--Sobic001G493100 Sobic003G251700 Sobic003G251700 Sobic006G172000--Sobic003G251700 Sobic006G135800 Sobic006G135800 Sobic006G172000--Sobic006G135800 Sobic006G041700 Sobic006G041700 Sobic006G172000--Sobic006G041700 Sobic007G097100 Sobic007G097100 Sobic006G172000--Sobic007G097100 Sobic006G172000--Sobic004G330200 Sobic006G172000--Sobic002G175200 Sobic006G172000--Sobic001G246600 Sobic006G226000 Sobic006G226000 Sobic006G172000--Sobic006G226000 Sobic006G255300 Sobic006G255300 Sobic001G068132--Sobic006G255300 Sobic001G068132--Sobic004G330200 Sobic001G068132--Sobic002G175200 Sobic001G068132--Sobic001G246600 Sobic001G068132--Sobic001G276800 Sobic001G068132--Sobic003G086800 Sobic006G016700 Sobic006G016700 Sobic001G068132--Sobic006G016700 Sobic003G350400 Sobic003G350400 Sobic001G068132--Sobic003G350400 Sobic001G068132--Sobic001G493100 Sobic001G493100--Sobic006G172000 Sobic001G493100--Sobic006G135800 Sobic001G493100--Sobic006G226000 Sobic001G493100--Sobic006G041700 Sobic006G197400 Sobic006G197400 Sobic001G493100--Sobic006G197400 Sobic001G493100--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic001G493100--Sobic010G037901 Sobic001G493100--Sobic003G086800 Sobic009G031800 Sobic009G031800 Sobic001G493100--Sobic009G031800 Sobic001G276800--Sobic006G255300 Sobic001G276800--Sobic001G246600 Sobic001G276800--Sobic002G175200 Sobic001G276800--Sobic004G330200 Sobic009G137500 Sobic009G137500 Sobic001G276800--Sobic009G137500 Sobic001G276800--Sobic001G068132 Sobic006G187000 Sobic006G187000 Sobic001G276800--Sobic006G187000 Sobic001G276800--Sobic003G350400 Sobic004G311600 Sobic004G311600 Sobic001G276800--Sobic004G311600 Sobic003G086800--Sobic010G037901 Sobic003G086800--Sobic007G160400 Sobic003G086800--Sobic006G226000 Sobic002G256900 Sobic002G256900 Sobic003G086800--Sobic002G256900 Sobic004G142400 Sobic004G142400 Sobic003G086800--Sobic004G142400 Sobic009G014800 Sobic009G014800 Sobic003G086800--Sobic009G014800 Sobic004G123200 Sobic004G123200 Sobic003G086800--Sobic004G123200 Sobic006G083900 Sobic006G083900 Sobic003G086800--Sobic006G083900 Sobic001G203350 Sobic001G203350 Sobic003G086800--Sobic001G203350 Sobic006G234433 Sobic006G234433 Sobic003G384600--Sobic006G234433 Sobic005G126701 Sobic005G126701 Sobic003G384600--Sobic005G126701 Sobic001G534200 Sobic001G534200 Sobic003G384600--Sobic001G534200 Sobic001G165600 Sobic001G165600 Sobic003G384600--Sobic001G165600 Sobic010G125000 Sobic010G125000 Sobic003G384600--Sobic010G125000 Sobic003G384600--Sobic006G083900 Sobic002G211300 Sobic002G211300 Sobic003G384600--Sobic002G211300 Sobic001G344300 Sobic001G344300 Sobic003G384600--Sobic001G344300 Sobic002G197700 Sobic002G197700 Sobic003G384600--Sobic002G197700 Sobic007G160400--Sobic004G142400 Sobic007G160400--Sobic006G226000 Sobic007G160400--Sobic005G126701 Sobic007G160400--Sobic006G083900 Sobic007G008500 Sobic007G008500 Sobic007G160400--Sobic007G008500 Sobic007G160400--Sobic003G086800 Sobic009G012500 Sobic009G012500 Sobic007G160400--Sobic009G012500 Sobic007G160400--Sobic009G031800 Sobic010G110100 Sobic010G110100 Sobic007G160400--Sobic010G110100
Octagon: transcription factors


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