Gene annotation
| Transcriptome id | Sobic.001G276800.1 |
|---|---|
| Synonym | PTR2, PTR2-B, ATPTR2, ATPTR2-B, NTR1, Sb01g027320 |
| Functional annotation | peptide transporter PTR2, putative, expressed |
| UniProt | C5WPY1 |
| Pfam | PF07690 |
| Panther DB | PTHR11654 PTHR11654:SF107 |
| NCBI CDD | KOG1237; H+/oligopeptide symporter |
| KEGG Orthology | K14638; SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| Gene Ontology | GO:0016021; integral component of membrane GO:0016020membrane GO:0006810transport GO:0005215transporter activity |
Orthologs (automatic annotation)
| TAIR | AT2G02040 : peptide transporter 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os10g02100.1 : peptide transporter PTR2, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G255300 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed | K14486: K14486, auxin response factor |
| 2 | Sobic.001G246600 | MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 3 | Sobic.002G175200 | A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed | K10523: speckle-type POZ protein |
| 4 | Sobic.004G330200 | "TGW6(Ortholog in rice:Ishimaru et al., 2013)"(PubMedID : 31659893)@SMP-30/Gluconolaconase/LRE-like region containing protein, expressed | - |
| 5 | Sobic.009G137500 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 6 | Sobic.001G068132 | - | - |
| 7 | Sobic.006G187000 | leucine-rich repeat family protein, putative, expressed | - |
| 8 | Sobic.003G350400 | thaumatin, putative, expressed | - |
| 9 | Sobic.004G311600 | lysM domain-containing GPI-anchored protein precursor, putative, expressed | - |
| 10 | Sobic.001G267100 | "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
| 11 | Sobic.004G139900 | ATP binding, related, putative, expressed | - |
| 12 | Sobic.005G092700 | expressed protein | - |
| 13 | Sobic.006G197400 | helix-loop-helix DNA-binding protein, putative, expressed | - |
| 14 | Sobic.006G041700 | sex determination protein tasselseed-2, putative, expressed | - |
| 15 | Sobic.006G172000 | pectinesterase, putative, expressed | - |
| 16 | Sobic.006G027900 | amidase, putative, expressed | K01426: E3.5.1.4, amidase |
| 17 | Sobic.006G073800 | DUF623 domain containing protein, expressed | - |
| 18 | Sobic.001G145200 | endonuclease/exonuclease/phosphatase family domain containing protein, expressed | - |
| 19 | Sobic.007G097100 | aspartic proteinase nepenthesin precursor, putative, expressed | - |
| 20 | Sobic.006G016700 | RNA-dependent RNA polymerase, putative, expressed | K11699: RDR, RNA-dependent RNA polymerase |
Gene co-expression network
Octagon: transcription factors
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