Gene annotation
Transcriptome id Sobic.006G197400.1
Synonym
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt A0A1B6PMY0
Pfam PF00010
Panther DB PTHR11969 PTHR11969:SF27
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G01460 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os02g46560.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a047332 , Zm00025a004941 , Zm00025a021600 , Zm00025a056723 , Zm00025a032372
Brachypodium KQK23205 , KQK00838 , KQK05832 , KQJ98697 , KQJ84300
Barley HORVU2Hr1G105960.1 , HORVU5Hr1G070000.8 , HORVU5Hr1G070000.9 , HORVU5Hr1G070000.1 , HORVU5Hr1G070000.2 , HORVU5Hr1G070000.3 , HORVU5Hr1G070000.4 , HORVU5Hr1G070000.5 , HORVU5Hr1G070000.7 , HORVU6Hr1G081120.2 , HORVU6Hr1G081120.3 , HORVU6Hr1G081120.5 , HORVU6Hr1G081120.6 , HORVU4Hr1G078270.6 , HORVU4Hr1G078270.7 , HORVU4Hr1G078270.5 , HORVU4Hr1G078270.2 , HORVU4Hr1G078270.1 , HORVU4Hr1G084850.1 , HORVU4Hr1G084850.3 , HORVU4Hr1G084850.2 , HORVU4Hr1G084850.5 , HORVU4Hr1G084850.4 , HORVU6Hr1G081120.1 , HORVU6Hr1G081120.4 , HORVU2Hr1G106030.1 , HORVU2Hr1G106030.2
Wheat TraesCS4B02G304500 , TraesCS6D02G315200 , TraesCS2D02G448000 , TraesCS5B02G245900 , TraesCS6A02G335500 , TraesCS2B02G469700 , TraesCS6D02G250700 , TraesCS2A02G448800 , TraesCS5A02G248200 , TraesCS5D02G255100 , TraesCS4A02G404700 , TraesCS4D02G342000 , TraesCS2B02G469800 , TraesCS4D02G302700 , TraesCS4B02G347100 , TraesCS6B02G366200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
2 Sobic.001G199200 YABBY domain containing protein, putative, expressed -
3 Sobic.006G041700 sex determination protein tasselseed-2, putative, expressed -
4 Sobic.006G255300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
5 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
6 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
7 Sobic.006G172000 pectinesterase, putative, expressed -
8 Sobic.001G246600 MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.002G175200 A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
10 Sobic.004G330200 "TGW6(Ortholog in rice:Ishimaru et al., 2013)"(PubMedID : 31659893)@SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
11 Sobic.001G064600 IQ calmodulin-binding motif domain containing protein, expressed -
12 Sobic.009G188500 expressed protein -
13 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
14 Sobic.001G068132 - -
15 Sobic.003G350400 thaumatin, putative, expressed -
16 Sobic.002G265200 formin, putative, expressed -
17 Sobic.002G144600 - -
18 Sobic.009G225500 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
19 Sobic.008G042200 DUF623 domain containing protein, expressed -
20 Sobic.003G366000 DUF623 domain containing protein, expressed -


Gene co-expression network
sample Sobic006G197400 Sobic006G197400 Sobic001G493100 Sobic001G493100 Sobic006G197400--Sobic001G493100 Sobic001G199200 Sobic001G199200 Sobic006G197400--Sobic001G199200 Sobic006G041700 Sobic006G041700 Sobic006G197400--Sobic006G041700 Sobic006G255300 Sobic006G255300 Sobic006G197400--Sobic006G255300 Sobic003G086800 Sobic003G086800 Sobic006G197400--Sobic003G086800 Sobic006G016700 Sobic006G016700 Sobic006G197400--Sobic006G016700 Sobic006G172000 Sobic006G172000 Sobic006G197400--Sobic006G172000 Sobic001G246600 Sobic001G246600 Sobic006G197400--Sobic001G246600 Sobic002G175200 Sobic002G175200 Sobic006G197400--Sobic002G175200 Sobic001G493100--Sobic006G172000 Sobic006G135800 Sobic006G135800 Sobic001G493100--Sobic006G135800 Sobic006G226000 Sobic006G226000 Sobic001G493100--Sobic006G226000 Sobic001G493100--Sobic006G041700 Sobic001G493100--Sobic006G197400 Sobic007G160400 Sobic007G160400 Sobic001G493100--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic001G493100--Sobic010G037901 Sobic001G493100--Sobic003G086800 Sobic009G031800 Sobic009G031800 Sobic001G493100--Sobic009G031800 Sobic001G199200--Sobic006G197400 Sobic001G064600 Sobic001G064600 Sobic001G199200--Sobic001G064600 Sobic003G283900 Sobic003G283900 Sobic001G199200--Sobic003G283900 Sobic008G150500 Sobic008G150500 Sobic001G199200--Sobic008G150500 Sobic006G187000 Sobic006G187000 Sobic001G199200--Sobic006G187000 Sobic001G199200--Sobic006G255300 Sobic004G302700 Sobic004G302700 Sobic001G199200--Sobic004G302700 Sobic004G211800 Sobic004G211800 Sobic001G199200--Sobic004G211800 Sobic001G199200--Sobic001G246600 Sobic006G041700--Sobic001G493100 Sobic006G041700--Sobic006G172000 Sobic006G041700--Sobic006G197400 Sobic006G041700--Sobic003G086800 Sobic006G041700--Sobic001G246600 Sobic006G041700--Sobic002G175200 Sobic004G330200 Sobic004G330200 Sobic006G041700--Sobic004G330200 Sobic003G350400 Sobic003G350400 Sobic006G041700--Sobic003G350400 Sobic002G259200 Sobic002G259200 Sobic006G041700--Sobic002G259200 Sobic001G276800 Sobic001G276800 Sobic006G255300--Sobic001G276800 Sobic001G068132 Sobic001G068132 Sobic006G255300--Sobic001G068132 Sobic009G137500 Sobic009G137500 Sobic006G255300--Sobic009G137500 Sobic006G255300--Sobic006G187000 Sobic006G255300--Sobic006G197400 Sobic006G255300--Sobic001G246600 Sobic006G255300--Sobic002G175200 Sobic006G255300--Sobic004G330200 Sobic001G267100 Sobic001G267100 Sobic006G255300--Sobic001G267100 Sobic003G086800--Sobic010G037901 Sobic003G086800--Sobic007G160400 Sobic003G086800--Sobic006G226000 Sobic002G256900 Sobic002G256900 Sobic003G086800--Sobic002G256900 Sobic004G142400 Sobic004G142400 Sobic003G086800--Sobic004G142400 Sobic009G014800 Sobic009G014800 Sobic003G086800--Sobic009G014800 Sobic004G123200 Sobic004G123200 Sobic003G086800--Sobic004G123200 Sobic006G083900 Sobic006G083900 Sobic003G086800--Sobic006G083900 Sobic001G203350 Sobic001G203350 Sobic003G086800--Sobic001G203350 Sobic003G147500 Sobic003G147500 Sobic006G016700--Sobic003G147500 Sobic006G275500 Sobic006G275500 Sobic006G016700--Sobic006G275500 Sobic006G016700--Sobic002G256900 Sobic006G016700--Sobic006G226000 Sobic007G050800 Sobic007G050800 Sobic006G016700--Sobic007G050800 Sobic002G168000 Sobic002G168000 Sobic006G016700--Sobic002G168000 Sobic007G187700 Sobic007G187700 Sobic006G016700--Sobic007G187700 Sobic008G052300 Sobic008G052300 Sobic006G016700--Sobic008G052300 Sobic005G153000 Sobic005G153000 Sobic006G016700--Sobic005G153000 Sobic006G172000--Sobic001G493100 Sobic003G251700 Sobic003G251700 Sobic006G172000--Sobic003G251700 Sobic006G172000--Sobic006G135800 Sobic006G172000--Sobic006G041700 Sobic007G097100 Sobic007G097100 Sobic006G172000--Sobic007G097100 Sobic006G172000--Sobic004G330200 Sobic006G172000--Sobic002G175200 Sobic006G172000--Sobic001G246600 Sobic006G172000--Sobic006G226000 Sobic001G246600--Sobic002G175200 Sobic001G246600--Sobic004G330200 Sobic001G246600--Sobic006G172000 Sobic001G246600--Sobic001G068132 Sobic001G246600--Sobic001G493100 Sobic001G246600--Sobic001G276800 Sobic001G246600--Sobic003G086800 Sobic003G384600 Sobic003G384600 Sobic001G246600--Sobic003G384600 Sobic001G246600--Sobic007G160400 Sobic002G175200--Sobic002G175200 Sobic002G175200--Sobic001G246600 Sobic002G175200--Sobic006G172000 Sobic002G175200--Sobic001G068132 Sobic002G175200--Sobic001G493100 Sobic002G175200--Sobic001G276800 Sobic002G175200--Sobic003G086800 Sobic002G175200--Sobic003G384600 Sobic002G175200--Sobic007G160400
Octagon: transcription factors


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