Gene annotation
Transcriptome id Sobic.001G199200.1
Synonym Sb01g017560, YAB1, AFO, FIL
Functional annotation YABBY domain containing protein, putative, expressed
UniProt C5WWB5
Pfam PF04690
Panther DB PTHR31675 PTHR31675:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007275; multicellular organism development


Orthologs (automatic annotation)
TAIR AT2G45190 : Plant-specific transcription factor YABBY family protein
RAP-DB (Rice) LOC_Os10g36420.1 : YABBY domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017465 , Zm00025a006374
Brachypodium KQJ97384
Barley HORVU1Hr1G046740.10 , HORVU1Hr1G046740.11 , HORVU1Hr1G046740.12 , HORVU1Hr1G046740.13 , HORVU1Hr1G046740.14 , HORVU1Hr1G046740.15 , HORVU1Hr1G046740.16 , HORVU1Hr1G046740.2 , HORVU1Hr1G046740.3 , HORVU1Hr1G046740.1 , HORVU1Hr1G046740.6 , HORVU1Hr1G046740.7 , HORVU1Hr1G046740.4 , HORVU1Hr1G046740.5 , HORVU1Hr1G046740.8 , HORVU1Hr1G046740.9
Wheat TraesCS1A02G176300 , TraesCS1B02G203800 , TraesCS1D02G162600 , TraesCS1D02G162600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -
2 Sobic.001G064600 IQ calmodulin-binding motif domain containing protein, expressed -
3 Sobic.003G283900 leucine-rich repeat family protein, putative, expressed -
4 Sobic.008G150500 - -
5 Sobic.006G187000 leucine-rich repeat family protein, putative, expressed -
6 Sobic.006G255300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
7 Sobic.004G302700 YABBY domain containing protein, putative, expressed -
8 Sobic.004G211800 - -
9 Sobic.001G246600 MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.002G175200 A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
11 Sobic.004G330200 "TGW6(Ortholog in rice:Ishimaru et al., 2013)"(PubMedID : 31659893)@SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
12 Sobic.009G174100 receptor-like protein kinase 2 precursor, putative, expressed -
13 Sobic.009G137500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.003G366000 DUF623 domain containing protein, expressed -
15 Sobic.009G208300 TOO MANY MOUTHS precursor, putative, expressed -
16 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.001G046400 expressed protein -
18 Sobic.009G060800 carboxyl-terminal proteinase, putative, expressed -
19 Sobic.006G041700 sex determination protein tasselseed-2, putative, expressed -
20 Sobic.007G115400 receptor-like protein kinase 5 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G199200 Sobic001G199200 Sobic006G197400 Sobic006G197400 Sobic001G199200--Sobic006G197400 Sobic001G064600 Sobic001G064600 Sobic001G199200--Sobic001G064600 Sobic003G283900 Sobic003G283900 Sobic001G199200--Sobic003G283900 Sobic008G150500 Sobic008G150500 Sobic001G199200--Sobic008G150500 Sobic006G187000 Sobic006G187000 Sobic001G199200--Sobic006G187000 Sobic006G255300 Sobic006G255300 Sobic001G199200--Sobic006G255300 Sobic004G302700 Sobic004G302700 Sobic001G199200--Sobic004G302700 Sobic004G211800 Sobic004G211800 Sobic001G199200--Sobic004G211800 Sobic001G246600 Sobic001G246600 Sobic001G199200--Sobic001G246600 Sobic001G493100 Sobic001G493100 Sobic006G197400--Sobic001G493100 Sobic006G197400--Sobic001G199200 Sobic006G041700 Sobic006G041700 Sobic006G197400--Sobic006G041700 Sobic006G197400--Sobic006G255300 Sobic003G086800 Sobic003G086800 Sobic006G197400--Sobic003G086800 Sobic006G016700 Sobic006G016700 Sobic006G197400--Sobic006G016700 Sobic006G172000 Sobic006G172000 Sobic006G197400--Sobic006G172000 Sobic006G197400--Sobic001G246600 Sobic002G175200 Sobic002G175200 Sobic006G197400--Sobic002G175200 Sobic009G060800 Sobic009G060800 Sobic001G064600--Sobic009G060800 Sobic003G366000 Sobic003G366000 Sobic001G064600--Sobic003G366000 Sobic010G192500 Sobic010G192500 Sobic001G064600--Sobic010G192500 Sobic010G058700 Sobic010G058700 Sobic001G064600--Sobic010G058700 Sobic001G064600--Sobic006G187000 Sobic001G008300 Sobic001G008300 Sobic001G064600--Sobic001G008300 Sobic009G208300 Sobic009G208300 Sobic001G064600--Sobic009G208300 Sobic001G064600--Sobic004G302700 Sobic009G174100 Sobic009G174100 Sobic001G064600--Sobic009G174100 Sobic003G016200 Sobic003G016200 Sobic003G283900--Sobic003G016200 Sobic003G283900--Sobic004G211800 Sobic003G283900--Sobic008G150500 Sobic001G046400 Sobic001G046400 Sobic003G283900--Sobic001G046400 Sobic003G283900--Sobic004G302700 Sobic003G283900--Sobic006G187000 Sobic007G115400 Sobic007G115400 Sobic003G283900--Sobic007G115400 Sobic004G211700 Sobic004G211700 Sobic003G283900--Sobic004G211700 Sobic010G023400 Sobic010G023400 Sobic003G283900--Sobic010G023400 Sobic008G150500--Sobic006G187000 Sobic008G150500--Sobic001G046400 Sobic008G150500--Sobic003G283900 Sobic008G150500--Sobic004G211800 Sobic008G150500--Sobic003G016200 Sobic008G150500--Sobic004G302700 Sobic002G029700 Sobic002G029700 Sobic008G150500--Sobic002G029700 Sobic009G137500 Sobic009G137500 Sobic008G150500--Sobic009G137500 Sobic004G342000 Sobic004G342000 Sobic008G150500--Sobic004G342000 Sobic006G187000--Sobic008G150500 Sobic006G187000--Sobic009G137500 Sobic006G187000--Sobic001G046400 Sobic006G187000--Sobic003G366000 Sobic006G187000--Sobic004G302700 Sobic001G160000 Sobic001G160000 Sobic006G187000--Sobic001G160000 Sobic006G187000--Sobic003G016200 Sobic006G187000--Sobic003G283900 Sobic001G267100 Sobic001G267100 Sobic006G187000--Sobic001G267100 Sobic001G276800 Sobic001G276800 Sobic006G255300--Sobic001G276800 Sobic001G068132 Sobic001G068132 Sobic006G255300--Sobic001G068132 Sobic006G255300--Sobic009G137500 Sobic006G255300--Sobic006G187000 Sobic006G255300--Sobic006G197400 Sobic006G255300--Sobic001G246600 Sobic006G255300--Sobic002G175200 Sobic004G330200 Sobic004G330200 Sobic006G255300--Sobic004G330200 Sobic006G255300--Sobic001G267100 Sobic004G302700--Sobic001G046400 Sobic004G302700--Sobic003G366000 Sobic001G135600 Sobic001G135600 Sobic004G302700--Sobic001G135600 Sobic004G302700--Sobic006G187000 Sobic009G141300 Sobic009G141300 Sobic004G302700--Sobic009G141300 Sobic004G302700--Sobic008G150500 Sobic004G302700--Sobic003G283900 Sobic002G011000 Sobic002G011000 Sobic004G302700--Sobic002G011000 Sobic004G302700--Sobic007G115400 Sobic004G211800--Sobic003G283900 Sobic004G211800--Sobic008G150500 Sobic004G211800--Sobic002G029700 Sobic008G012600 Sobic008G012600 Sobic004G211800--Sobic008G012600 Sobic006G151800 Sobic006G151800 Sobic004G211800--Sobic006G151800 Sobic004G211800--Sobic004G342000 Sobic004G211800--Sobic003G016200 Sobic006G160800 Sobic006G160800 Sobic004G211800--Sobic006G160800 Sobic004G211800--Sobic001G046400 Sobic001G246600--Sobic002G175200 Sobic001G246600--Sobic004G330200 Sobic001G246600--Sobic006G172000 Sobic001G246600--Sobic001G068132 Sobic001G246600--Sobic001G493100 Sobic001G246600--Sobic001G276800 Sobic001G246600--Sobic003G086800 Sobic003G384600 Sobic003G384600 Sobic001G246600--Sobic003G384600 Sobic007G160400 Sobic007G160400 Sobic001G246600--Sobic007G160400
Octagon: transcription factors


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