Gene annotation
Transcriptome id Sobic.006G255300.3,Sobic.006G255300.2,Sobic.006G255300.1,Sobic.006G255300.4
Synonym IAA24, MP, auxin response factor, ARF5, SbARF14, Sb06g031900
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment" (PubMedID : 20499123)
auxin response factor, putative, expressed
UniProt C5Y9Z0 , A0A1B6PNX4
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF10
NCBI CDD -
KEGG Orthology K14486; K14486, auxin response factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT1G19850 : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related
RAP-DB (Rice) LOC_Os04g56850.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a009414 , Zm00025a057307 , Zm00025a049595
Brachypodium KQJ85161 , KQJ85149
Barley HORVU2Hr1G109650.9 , HORVU2Hr1G109650.8 , HORVU2Hr1G109650.1 , HORVU2Hr1G109650.3 , HORVU2Hr1G109650.2 , HORVU2Hr1G109650.5 , HORVU2Hr1G109650.4 , HORVU2Hr1G109650.7 , HORVU2Hr1G109650.6 , HORVU2Hr1G109650.18 , HORVU2Hr1G109650.15 , HORVU2Hr1G109650.14 , HORVU2Hr1G109650.17 , HORVU2Hr1G109650.16 , HORVU2Hr1G109650.11 , HORVU2Hr1G109650.10 , HORVU2Hr1G109650.13 , HORVU2Hr1G109650.12
Wheat TraesCS2B02G519200 , TraesCS2A02G491000 , TraesCS2B02G519200 , TraesCS2D02G491200 , TraesCS2D02G491200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G276800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
2 Sobic.001G068132 - -
3 Sobic.009G137500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.006G187000 leucine-rich repeat family protein, putative, expressed -
5 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -
6 Sobic.001G246600 MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.002G175200 A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
8 Sobic.004G330200 "TGW6(Ortholog in rice:Ishimaru et al., 2013)"(PubMedID : 31659893)@SMP-30/Gluconolaconase/LRE-like region containing protein, expressed -
9 Sobic.001G267100 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)
10 Sobic.004G311600 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
11 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
12 Sobic.004G139900 ATP binding, related, putative, expressed -
13 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
14 Sobic.005G092700 expressed protein -
15 Sobic.001G145200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
16 Sobic.001G160000 LSTK-1-like kinase, putative, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
17 Sobic.002G286700 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
18 Sobic.003G350400 thaumatin, putative, expressed -
19 Sobic.007G219100 phosphatidylinositol transfer, putative, expressed -
20 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -


Gene co-expression network
sample Sobic006G255300 Sobic006G255300 Sobic001G276800 Sobic001G276800 Sobic006G255300--Sobic001G276800 Sobic001G068132 Sobic001G068132 Sobic006G255300--Sobic001G068132 Sobic009G137500 Sobic009G137500 Sobic006G255300--Sobic009G137500 Sobic006G187000 Sobic006G187000 Sobic006G255300--Sobic006G187000 Sobic006G197400 Sobic006G197400 Sobic006G255300--Sobic006G197400 Sobic001G246600 Sobic001G246600 Sobic006G255300--Sobic001G246600 Sobic002G175200 Sobic002G175200 Sobic006G255300--Sobic002G175200 Sobic004G330200 Sobic004G330200 Sobic006G255300--Sobic004G330200 Sobic001G267100 Sobic001G267100 Sobic006G255300--Sobic001G267100 Sobic001G276800--Sobic006G255300 Sobic001G276800--Sobic001G246600 Sobic001G276800--Sobic002G175200 Sobic001G276800--Sobic004G330200 Sobic001G276800--Sobic009G137500 Sobic001G276800--Sobic001G068132 Sobic001G276800--Sobic006G187000 Sobic003G350400 Sobic003G350400 Sobic001G276800--Sobic003G350400 Sobic004G311600 Sobic004G311600 Sobic001G276800--Sobic004G311600 Sobic001G068132--Sobic006G255300 Sobic001G068132--Sobic004G330200 Sobic001G068132--Sobic002G175200 Sobic001G068132--Sobic001G246600 Sobic001G068132--Sobic001G276800 Sobic003G086800 Sobic003G086800 Sobic001G068132--Sobic003G086800 Sobic006G016700 Sobic006G016700 Sobic001G068132--Sobic006G016700 Sobic001G068132--Sobic003G350400 Sobic001G493100 Sobic001G493100 Sobic001G068132--Sobic001G493100 Sobic009G137500--Sobic006G187000 Sobic009G137500--Sobic001G267100 Sobic006G105600 Sobic006G105600 Sobic009G137500--Sobic006G105600 Sobic009G137500--Sobic006G255300 Sobic003G366000 Sobic003G366000 Sobic009G137500--Sobic003G366000 Sobic003G016200 Sobic003G016200 Sobic009G137500--Sobic003G016200 Sobic009G137500--Sobic001G276800 Sobic008G150500 Sobic008G150500 Sobic009G137500--Sobic008G150500 Sobic001G046400 Sobic001G046400 Sobic009G137500--Sobic001G046400 Sobic006G187000--Sobic008G150500 Sobic006G187000--Sobic009G137500 Sobic006G187000--Sobic001G046400 Sobic006G187000--Sobic003G366000 Sobic004G302700 Sobic004G302700 Sobic006G187000--Sobic004G302700 Sobic001G160000 Sobic001G160000 Sobic006G187000--Sobic001G160000 Sobic006G187000--Sobic003G016200 Sobic003G283900 Sobic003G283900 Sobic006G187000--Sobic003G283900 Sobic006G187000--Sobic001G267100 Sobic006G197400--Sobic001G493100 Sobic001G199200 Sobic001G199200 Sobic006G197400--Sobic001G199200 Sobic006G041700 Sobic006G041700 Sobic006G197400--Sobic006G041700 Sobic006G197400--Sobic006G255300 Sobic006G197400--Sobic003G086800 Sobic006G197400--Sobic006G016700 Sobic006G172000 Sobic006G172000 Sobic006G197400--Sobic006G172000 Sobic006G197400--Sobic001G246600 Sobic006G197400--Sobic002G175200 Sobic001G246600--Sobic002G175200 Sobic001G246600--Sobic004G330200 Sobic001G246600--Sobic006G172000 Sobic001G246600--Sobic001G068132 Sobic001G246600--Sobic001G493100 Sobic001G246600--Sobic001G276800 Sobic001G246600--Sobic003G086800 Sobic003G384600 Sobic003G384600 Sobic001G246600--Sobic003G384600 Sobic007G160400 Sobic007G160400 Sobic001G246600--Sobic007G160400 Sobic002G175200--Sobic002G175200 Sobic002G175200--Sobic001G246600 Sobic002G175200--Sobic006G172000 Sobic002G175200--Sobic001G068132 Sobic002G175200--Sobic001G493100 Sobic002G175200--Sobic001G276800 Sobic002G175200--Sobic003G086800 Sobic002G175200--Sobic003G384600 Sobic002G175200--Sobic007G160400 Sobic004G330200--Sobic002G175200 Sobic004G330200--Sobic001G246600 Sobic004G330200--Sobic006G172000 Sobic004G330200--Sobic001G068132 Sobic004G330200--Sobic001G493100 Sobic004G330200--Sobic001G276800 Sobic004G330200--Sobic003G086800 Sobic004G330200--Sobic003G384600 Sobic004G330200--Sobic007G160400 Sobic001G267100--Sobic006G187000 Sobic005G091000 Sobic005G091000 Sobic001G267100--Sobic005G091000 Sobic001G145200 Sobic001G145200 Sobic001G267100--Sobic001G145200 Sobic001G267100--Sobic006G105600 Sobic001G267100--Sobic009G137500 Sobic001G381100 Sobic001G381100 Sobic001G267100--Sobic001G381100 Sobic001G345200 Sobic001G345200 Sobic001G267100--Sobic001G345200 Sobic004G168600 Sobic004G168600 Sobic001G267100--Sobic004G168600 Sobic006G074900 Sobic006G074900 Sobic001G267100--Sobic006G074900
Octagon: transcription factors


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