Gene annotation
Transcriptome id Sobic.002G286700.1
Synonym Sb02g031910, LYM2
Functional annotation lysM domain-containing GPI-anchored protein precursor, putative, expressed
UniProt C5X708
Pfam PF01476
Panther DB PTHR33734 PTHR33734:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G17120 : lysm domain GPI-anchored protein 2 precursor
RAP-DB (Rice) LOC_Os09g37600.1 : lysM domain-containing GPI-anchored protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a047975
Brachypodium KQJ91347
Barley HORVU5Hr1G086610.1
Wheat TraesCS5A02G347800 , TraesCS5D02G354000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G286700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
2 Sobic.001G304800 expressed protein -
3 Sobic.003G246800 GATA zinc finger domain containing protein, expressed -
4 Sobic.008G083500 expressed protein -
5 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
6 Sobic.009G101100 patellin protein, putative, expressed -
7 Sobic.001G461800 zinc finger family protein, putative, expressed -
8 Sobic.006G105600 "domain confirmed by Pfam database, expression is supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA treatment"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
9 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
10 Sobic.004G311600 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
11 Sobic.010G024500 expressed protein -
12 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
13 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
14 Sobic.005G092700 expressed protein -
15 Sobic.006G196600 expressed protein -
16 Sobic.004G164700 expressed protein -
17 Sobic.006G221300 expressed protein -
18 Sobic.006G255300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
19 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
20 Sobic.006G124400 ATP binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G286700 Sobic002G286700 Sobic008G190000 Sobic008G190000 Sobic002G286700--Sobic008G190000 Sobic001G304800 Sobic001G304800 Sobic002G286700--Sobic001G304800 Sobic003G246800 Sobic003G246800 Sobic002G286700--Sobic003G246800 Sobic008G083500 Sobic008G083500 Sobic002G286700--Sobic008G083500 Sobic002G296000 Sobic002G296000 Sobic002G286700--Sobic002G296000 Sobic009G101100 Sobic009G101100 Sobic002G286700--Sobic009G101100 Sobic001G461800 Sobic001G461800 Sobic002G286700--Sobic001G461800 Sobic006G105600 Sobic006G105600 Sobic002G286700--Sobic006G105600 Sobic003G032200 Sobic003G032200 Sobic002G286700--Sobic003G032200 Sobic001G381100 Sobic001G381100 Sobic008G190000--Sobic001G381100 Sobic005G092700 Sobic005G092700 Sobic008G190000--Sobic005G092700 Sobic001G160000 Sobic001G160000 Sobic008G190000--Sobic001G160000 Sobic010G024500 Sobic010G024500 Sobic008G190000--Sobic010G024500 Sobic003G366000 Sobic003G366000 Sobic008G190000--Sobic003G366000 Sobic008G042200 Sobic008G042200 Sobic008G190000--Sobic008G042200 Sobic008G190000--Sobic002G286700 Sobic009G200000 Sobic009G200000 Sobic008G190000--Sobic009G200000 Sobic004G115700 Sobic004G115700 Sobic008G190000--Sobic004G115700 Sobic001G304800--Sobic002G296000 Sobic001G304800--Sobic002G286700 Sobic001G304800--Sobic008G083500 Sobic001G304800--Sobic009G101100 Sobic001G304800--Sobic006G105600 Sobic007G218100 Sobic007G218100 Sobic001G304800--Sobic007G218100 Sobic001G304800--Sobic003G246800 Sobic009G146250 Sobic009G146250 Sobic001G304800--Sobic009G146250 Sobic006G124400 Sobic006G124400 Sobic001G304800--Sobic006G124400 Sobic003G246800--Sobic002G286700 Sobic003G246800--Sobic001G304800 Sobic003G246800--Sobic007G218100 Sobic003G246800--Sobic006G105600 Sobic003G246800--Sobic009G101100 Sobic003G246800--Sobic010G024500 Sobic003G246800--Sobic008G190000 Sobic003G246800--Sobic008G083500 Sobic003G246800--Sobic002G296000 Sobic008G083500--Sobic002G296000 Sobic003G420300 Sobic003G420300 Sobic008G083500--Sobic003G420300 Sobic008G083500--Sobic010G024500 Sobic008G083500--Sobic006G105600 Sobic008G083500--Sobic001G304800 Sobic008G083500--Sobic009G101100 Sobic008G083500--Sobic002G286700 Sobic003G292700 Sobic003G292700 Sobic008G083500--Sobic003G292700 Sobic001G054700 Sobic001G054700 Sobic008G083500--Sobic001G054700 Sobic007G027900 Sobic007G027900 Sobic002G296000--Sobic007G027900 Sobic002G296000--Sobic006G124400 Sobic002G296000--Sobic009G101100 Sobic007G168900 Sobic007G168900 Sobic002G296000--Sobic007G168900 Sobic005G005700 Sobic005G005700 Sobic002G296000--Sobic005G005700 Sobic008G006800 Sobic008G006800 Sobic002G296000--Sobic008G006800 Sobic004G271300 Sobic004G271300 Sobic002G296000--Sobic004G271300 Sobic010G017400 Sobic010G017400 Sobic002G296000--Sobic010G017400 Sobic002G296000--Sobic008G083500 Sobic009G101100--Sobic002G296000 Sobic009G101100--Sobic006G124400 Sobic009G101100--Sobic007G027900 Sobic009G101100--Sobic003G032200 Sobic006G221300 Sobic006G221300 Sobic009G101100--Sobic006G221300 Sobic009G101100--Sobic001G304800 Sobic009G101100--Sobic008G083500 Sobic009G101100--Sobic006G105600 Sobic010G105400 Sobic010G105400 Sobic009G101100--Sobic010G105400 Sobic003G250000 Sobic003G250000 Sobic001G461800--Sobic003G250000 Sobic004G164700 Sobic004G164700 Sobic001G461800--Sobic004G164700 Sobic003G291000 Sobic003G291000 Sobic001G461800--Sobic003G291000 Sobic001G461800--Sobic002G286700 Sobic001G461800--Sobic008G190000 Sobic003G078300 Sobic003G078300 Sobic001G461800--Sobic003G078300 Sobic004G253500 Sobic004G253500 Sobic001G461800--Sobic004G253500 Sobic001G461800--Sobic001G381100 Sobic006G241800 Sobic006G241800 Sobic001G461800--Sobic006G241800 Sobic005G091000 Sobic005G091000 Sobic006G105600--Sobic005G091000 Sobic001G267100 Sobic001G267100 Sobic006G105600--Sobic001G267100 Sobic006G105600--Sobic006G124400 Sobic006G105600--Sobic002G296000 Sobic009G137500 Sobic009G137500 Sobic006G105600--Sobic009G137500 Sobic002G394500 Sobic002G394500 Sobic006G105600--Sobic002G394500 Sobic004G233700 Sobic004G233700 Sobic006G105600--Sobic004G233700 Sobic006G105600--Sobic008G083500 Sobic006G105600--Sobic001G304800 Sobic009G184200 Sobic009G184200 Sobic003G032200--Sobic009G184200 Sobic010G086000 Sobic010G086000 Sobic003G032200--Sobic010G086000 Sobic003G032200--Sobic010G105400 Sobic010G241100 Sobic010G241100 Sobic003G032200--Sobic010G241100 Sobic009G172950 Sobic009G172950 Sobic003G032200--Sobic009G172950 Sobic006G142500 Sobic006G142500 Sobic003G032200--Sobic006G142500 Sobic003G032200--Sobic002G296000 Sobic003G444100 Sobic003G444100 Sobic003G032200--Sobic003G444100 Sobic002G204400 Sobic002G204400 Sobic003G032200--Sobic002G204400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.