Gene annotation
Transcriptome id Sobic.003G246800.1
Synonym Sb03g030310, GATA19
Functional annotation GATA zinc finger domain containing protein, expressed
UniProt A0A1B6Q548
Pfam PF00320
Panther DB PTHR10071 PTHR10071:SF156
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G36620 : GATA transcription factor 19
RAP-DB (Rice) LOC_Os01g47360.1 : GATA zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008925 , Zm00025a036640 , Zm00025a028152 , Zm00025a044687
Brachypodium KQK12335 , KQK09052 , KQK11831 , KQK04650
Barley HORVU3Hr1G059870.2 , HORVU3Hr1G059870.3 , HORVU3Hr1G117680.45 , HORVU1Hr1G091450.3 , HORVU5Hr1G116310.3 , HORVU5Hr1G116310.2 , HORVU5Hr1G116310.1
Wheat TraesCS1D02G425900 , TraesCS4A02G364700 , TraesCS3B02G603900 , TraesCS5B02G508800 , TraesCS3B02G269000 , TraesCS3A02G538400 , TraesCS3D02G241100 , TraesCS3A02G240800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G286700 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
2 Sobic.001G304800 expressed protein -
3 Sobic.007G218100 transmembrane receptor, putative, expressed -
4 Sobic.006G105600 "domain confirmed by Pfam database, expression is supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA treatment"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
5 Sobic.009G101100 patellin protein, putative, expressed -
6 Sobic.010G024500 expressed protein -
7 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
8 Sobic.008G083500 expressed protein -
9 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
10 Sobic.002G392500 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
11 Sobic.008G159901 - K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
12 Sobic.004G311600 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
13 Sobic.007G027900 chloroplast unusual positioning protein, putative, expressed -
14 Sobic.002G224200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
15 Sobic.008G042200 DUF623 domain containing protein, expressed -
16 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
17 Sobic.006G221300 expressed protein -
18 Sobic.004G115700 extra-large G-protein-related, putative, expressed -
19 Sobic.010G277300 "BRD2(Ortholog in rice:Hong et al., 2005)"(PubMedID : 31659939)@FAD-linked oxidoreductase protein, putative, expressed K09828: DHCR24, Delta24-sterol reductase
20 Sobic.006G124400 ATP binding protein, putative, expressed -


Gene co-expression network
sample Sobic003G246800 Sobic003G246800 Sobic002G286700 Sobic002G286700 Sobic003G246800--Sobic002G286700 Sobic001G304800 Sobic001G304800 Sobic003G246800--Sobic001G304800 Sobic007G218100 Sobic007G218100 Sobic003G246800--Sobic007G218100 Sobic006G105600 Sobic006G105600 Sobic003G246800--Sobic006G105600 Sobic009G101100 Sobic009G101100 Sobic003G246800--Sobic009G101100 Sobic010G024500 Sobic010G024500 Sobic003G246800--Sobic010G024500 Sobic008G190000 Sobic008G190000 Sobic003G246800--Sobic008G190000 Sobic008G083500 Sobic008G083500 Sobic003G246800--Sobic008G083500 Sobic002G296000 Sobic002G296000 Sobic003G246800--Sobic002G296000 Sobic002G286700--Sobic008G190000 Sobic002G286700--Sobic001G304800 Sobic002G286700--Sobic003G246800 Sobic002G286700--Sobic008G083500 Sobic002G286700--Sobic002G296000 Sobic002G286700--Sobic009G101100 Sobic001G461800 Sobic001G461800 Sobic002G286700--Sobic001G461800 Sobic002G286700--Sobic006G105600 Sobic003G032200 Sobic003G032200 Sobic002G286700--Sobic003G032200 Sobic001G304800--Sobic002G296000 Sobic001G304800--Sobic002G286700 Sobic001G304800--Sobic008G083500 Sobic001G304800--Sobic009G101100 Sobic001G304800--Sobic006G105600 Sobic001G304800--Sobic007G218100 Sobic001G304800--Sobic003G246800 Sobic009G146250 Sobic009G146250 Sobic001G304800--Sobic009G146250 Sobic006G124400 Sobic006G124400 Sobic001G304800--Sobic006G124400 Sobic001G532800 Sobic001G532800 Sobic007G218100--Sobic001G532800 Sobic007G218100--Sobic001G304800 Sobic004G052200 Sobic004G052200 Sobic007G218100--Sobic004G052200 Sobic002G230800 Sobic002G230800 Sobic007G218100--Sobic002G230800 Sobic007G218100--Sobic003G246800 Sobic006G275500 Sobic006G275500 Sobic007G218100--Sobic006G275500 Sobic002G392500 Sobic002G392500 Sobic007G218100--Sobic002G392500 Sobic001G104500 Sobic001G104500 Sobic007G218100--Sobic001G104500 Sobic008G159901 Sobic008G159901 Sobic007G218100--Sobic008G159901 Sobic005G091000 Sobic005G091000 Sobic006G105600--Sobic005G091000 Sobic001G267100 Sobic001G267100 Sobic006G105600--Sobic001G267100 Sobic006G105600--Sobic006G124400 Sobic006G105600--Sobic002G296000 Sobic009G137500 Sobic009G137500 Sobic006G105600--Sobic009G137500 Sobic002G394500 Sobic002G394500 Sobic006G105600--Sobic002G394500 Sobic004G233700 Sobic004G233700 Sobic006G105600--Sobic004G233700 Sobic006G105600--Sobic008G083500 Sobic006G105600--Sobic001G304800 Sobic009G101100--Sobic002G296000 Sobic009G101100--Sobic006G124400 Sobic007G027900 Sobic007G027900 Sobic009G101100--Sobic007G027900 Sobic009G101100--Sobic003G032200 Sobic006G221300 Sobic006G221300 Sobic009G101100--Sobic006G221300 Sobic009G101100--Sobic001G304800 Sobic009G101100--Sobic008G083500 Sobic009G101100--Sobic006G105600 Sobic010G105400 Sobic010G105400 Sobic009G101100--Sobic010G105400 Sobic005G163400 Sobic005G163400 Sobic010G024500--Sobic005G163400 Sobic010G024500--Sobic008G190000 Sobic001G390400 Sobic001G390400 Sobic010G024500--Sobic001G390400 Sobic006G241800 Sobic006G241800 Sobic010G024500--Sobic006G241800 Sobic010G024500--Sobic008G083500 Sobic001G381100 Sobic001G381100 Sobic010G024500--Sobic001G381100 Sobic002G319300 Sobic002G319300 Sobic010G024500--Sobic002G319300 Sobic010G192500 Sobic010G192500 Sobic010G024500--Sobic010G192500 Sobic004G164700 Sobic004G164700 Sobic010G024500--Sobic004G164700 Sobic008G190000--Sobic001G381100 Sobic005G092700 Sobic005G092700 Sobic008G190000--Sobic005G092700 Sobic001G160000 Sobic001G160000 Sobic008G190000--Sobic001G160000 Sobic008G190000--Sobic010G024500 Sobic003G366000 Sobic003G366000 Sobic008G190000--Sobic003G366000 Sobic008G042200 Sobic008G042200 Sobic008G190000--Sobic008G042200 Sobic008G190000--Sobic002G286700 Sobic009G200000 Sobic009G200000 Sobic008G190000--Sobic009G200000 Sobic004G115700 Sobic004G115700 Sobic008G190000--Sobic004G115700 Sobic008G083500--Sobic002G296000 Sobic003G420300 Sobic003G420300 Sobic008G083500--Sobic003G420300 Sobic008G083500--Sobic010G024500 Sobic008G083500--Sobic006G105600 Sobic008G083500--Sobic001G304800 Sobic008G083500--Sobic009G101100 Sobic008G083500--Sobic002G286700 Sobic003G292700 Sobic003G292700 Sobic008G083500--Sobic003G292700 Sobic001G054700 Sobic001G054700 Sobic008G083500--Sobic001G054700 Sobic002G296000--Sobic007G027900 Sobic002G296000--Sobic006G124400 Sobic002G296000--Sobic009G101100 Sobic007G168900 Sobic007G168900 Sobic002G296000--Sobic007G168900 Sobic005G005700 Sobic005G005700 Sobic002G296000--Sobic005G005700 Sobic008G006800 Sobic008G006800 Sobic002G296000--Sobic008G006800 Sobic004G271300 Sobic004G271300 Sobic002G296000--Sobic004G271300 Sobic010G017400 Sobic010G017400 Sobic002G296000--Sobic010G017400 Sobic002G296000--Sobic008G083500
Octagon: transcription factors


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