Gene annotation
| Transcriptome id | Sobic.001G381100.1 |
|---|---|
| Synonym | Sb01g036160 |
| Functional annotation | receptor-like protein kinase precursor, putative, expressed |
| UniProt | C5X0T5 |
| Pfam | PF08263 PF07714 PF13855 |
| Panther DB | PTHR27000 PTHR27000:SF197 |
| NCBI CDD | KOG1187; Serine/threonine protein kinase |
| KEGG Orthology | - |
| Gene Ontology | GO:0006468; protein phosphorylation GO:0004672protein kinase activity GO:0005515protein binding |
Orthologs (automatic annotation)
| TAIR | AT3G56370 : Leucine-rich repeat protein kinase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g21730.1 : receptor-like protein kinase precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a002349 |
| Brachypodium | KQK21801 , PNT77462 |
| Barley | HORVU4Hr1G050250.4 , HORVU4Hr1G050250.2 , HORVU4Hr1G050250.3 , HORVU4Hr1G050250.1 |
| Wheat | TraesCS4B02G169900 , TraesCS4D02G172000 , TraesCS4A02G135200 |
| Populus | - |
JBrowse
| Sobic.001G381100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.008G190000 | leucine-rich repeat family protein, putative, expressed | - |
| 2 | Sobic.001G160000 | LSTK-1-like kinase, putative, expressed | K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5 |
| 3 | Sobic.001G074100 | kinesin motor domain containing protein, putative, expressed | K10401: kinesin family member 18/19 |
| 4 | Sobic.006G074900 | heat shock protein-related, putative, expressed | - |
| 5 | Sobic.005G092700 | expressed protein | - |
| 6 | Sobic.004G168600 | heat shock protein-related, putative, expressed | - |
| 7 | Sobic.010G024500 | expressed protein | - |
| 8 | Sobic.006G241800 | receptor kinase, putative, expressed | - |
| 9 | Sobic.003G366000 | DUF623 domain containing protein, expressed | - |
| 10 | Sobic.003G089300 | heavy-metal-associated domain-containing protein, putative, expressed | - |
| 11 | Sobic.005G091000 | receptor protein kinase CLAVATA1 precursor, putative, expressed | - |
| 12 | Sobic.001G267100 | "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed | K13946: AUX1, auxin influx carrier (AUX1 LAX family) |
| 13 | Sobic.006G187000 | leucine-rich repeat family protein, putative, expressed | - |
| 14 | Sobic.010G192500 | anthranilate phosphoribosyltransferase, putative, expressed | - |
| 15 | Sobic.007G211200 | inactive receptor kinase At2g26730 precursor, putative, expressed | - |
| 16 | Sobic.004G317200 | "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed | - |
| 17 | Sobic.004G248100 | endoglucanase, putative, expressed | - |
| 18 | Sobic.003G338200 | receptor-like protein kinase precursor, putative, expressed | - |
| 19 | Sobic.001G145200 | endonuclease/exonuclease/phosphatase family domain containing protein, expressed | - |
| 20 | Sobic.003G018700 | CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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