Gene annotation
Transcriptome id Sobic.004G317200.1
Synonym SbER2, ER, Sb04g034820, QRP1, ERECTA
Functional annotation "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize." (PubMedID : 31615416)
receptor-like protein kinase 5 precursor, putative, expressed
UniProt A0A194YTN4
Pfam PF08263 PF00560 PF13855 PF00069
Panther DB PTHR27000 PTHR27000:SF188
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G26330 : Leucine-rich receptor-like protein kinase family protein
RAP-DB (Rice) LOC_Os06g10230.1 : receptor-like protein kinase 5 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a001771 , Zm00025a022323
Brachypodium -
Barley HORVU6Hr1G081290.49 , HORVU6Hr1G081290.48 , HORVU6Hr1G081290.29 , HORVU6Hr1G081290.28 , HORVU6Hr1G081290.25 , HORVU6Hr1G081290.24 , HORVU6Hr1G081290.27 , HORVU6Hr1G081290.26 , HORVU6Hr1G081290.21 , HORVU6Hr1G081290.20 , HORVU6Hr1G081290.22 , HORVU6Hr1G081290.47 , HORVU6Hr1G081290.46 , HORVU6Hr1G081290.45 , HORVU6Hr1G081290.44 , HORVU6Hr1G081290.43 , HORVU6Hr1G081290.42 , HORVU6Hr1G081290.41 , HORVU6Hr1G081290.40 , HORVU6Hr1G081290.8 , HORVU6Hr1G081290.9 , HORVU6Hr1G081290.2 , HORVU6Hr1G081290.3 , HORVU6Hr1G081290.1 , HORVU6Hr1G081290.6 , HORVU6Hr1G081290.7 , HORVU6Hr1G081290.4 , HORVU6Hr1G081290.5 , HORVU6Hr1G081290.18 , HORVU6Hr1G081290.19 , HORVU6Hr1G081290.10 , HORVU6Hr1G081290.11 , HORVU6Hr1G081290.12 , HORVU6Hr1G081290.13 , HORVU6Hr1G081290.14 , HORVU6Hr1G081290.15 , HORVU6Hr1G081290.16 , HORVU6Hr1G081290.32 , HORVU6Hr1G081290.33 , HORVU6Hr1G081290.30 , HORVU6Hr1G081290.31 , HORVU6Hr1G081290.36 , HORVU6Hr1G081290.37 , HORVU6Hr1G081290.34 , HORVU6Hr1G081290.35 , HORVU6Hr1G081290.38 , HORVU6Hr1G081290.39 , HORVU6Hr1G081290.17 , HORVU6Hr1G081290.50 , HORVU6Hr1G081290.52 , HORVU6Hr1G081290.23
Wheat TraesCS6B02G366900 , TraesCS6B02G366900 , TraesCS7D02G166100 , TraesCS6A02G336300 , TraesCS7D02G166100 , TraesCS7A02G164000 , TraesCS6D02G316000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
2 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
3 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
4 Sobic.003G089300 heavy-metal-associated domain-containing protein, putative, expressed -
5 Sobic.001G390400 expressed protein -
6 Sobic.006G241800 receptor kinase, putative, expressed -
7 Sobic.007G211200 inactive receptor kinase At2g26730 precursor, putative, expressed -
8 Sobic.007G160300 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
9 Sobic.006G058000 OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
10 Sobic.004G248100 endoglucanase, putative, expressed -
11 Sobic.002G319300 IQ calmodulin-binding motif family protein, expressed K16743: ASPM, abnormal spindle-like microcephaly-associated protein
12 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
13 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
14 Sobic.010G192500 anthranilate phosphoribosyltransferase, putative, expressed -
15 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
16 Sobic.007G165800 SLG(Ortholog in rice:Feng et al. (2016))(PubMedID : 31659908)@transferase family protein, putative, expressed -
17 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
18 Sobic.001G493900 beta-galactosidase, putative, expressed -
19 Sobic.001G155700 expansin precursor, putative, expressed -
20 Sobic.004G211700 - -


Gene co-expression network
sample Sobic004G317200 Sobic004G317200 Sobic010G020600 Sobic010G020600 Sobic004G317200--Sobic010G020600 Sobic004G357000 Sobic004G357000 Sobic004G317200--Sobic004G357000 Sobic001G470200 Sobic001G470200 Sobic004G317200--Sobic001G470200 Sobic003G089300 Sobic003G089300 Sobic004G317200--Sobic003G089300 Sobic001G390400 Sobic001G390400 Sobic004G317200--Sobic001G390400 Sobic006G241800 Sobic006G241800 Sobic004G317200--Sobic006G241800 Sobic007G211200 Sobic007G211200 Sobic004G317200--Sobic007G211200 Sobic007G160300 Sobic007G160300 Sobic004G317200--Sobic007G160300 Sobic006G058000 Sobic006G058000 Sobic004G317200--Sobic006G058000 Sobic010G020600--Sobic004G317200 Sobic004G248100 Sobic004G248100 Sobic010G020600--Sobic004G248100 Sobic003G339600 Sobic003G339600 Sobic010G020600--Sobic003G339600 Sobic003G070600 Sobic003G070600 Sobic010G020600--Sobic003G070600 Sobic009G235700 Sobic009G235700 Sobic010G020600--Sobic009G235700 Sobic010G020600--Sobic007G160300 Sobic003G018700 Sobic003G018700 Sobic010G020600--Sobic003G018700 Sobic008G097700 Sobic008G097700 Sobic010G020600--Sobic008G097700 Sobic001G221900 Sobic001G221900 Sobic010G020600--Sobic001G221900 Sobic004G357000--Sobic007G211200 Sobic003G113500 Sobic003G113500 Sobic004G357000--Sobic003G113500 Sobic004G357000--Sobic004G317200 Sobic004G357000--Sobic003G089300 Sobic004G357000--Sobic004G248100 Sobic002G032500 Sobic002G032500 Sobic004G357000--Sobic002G032500 Sobic005G129600 Sobic005G129600 Sobic004G357000--Sobic005G129600 Sobic004G357000--Sobic001G470200 Sobic004G211700 Sobic004G211700 Sobic004G357000--Sobic004G211700 Sobic001G470200--Sobic004G357000 Sobic001G470200--Sobic004G317200 Sobic001G470200--Sobic010G020600 Sobic007G032100 Sobic007G032100 Sobic001G470200--Sobic007G032100 Sobic007G165800 Sobic007G165800 Sobic001G470200--Sobic007G165800 Sobic004G274600 Sobic004G274600 Sobic001G470200--Sobic004G274600 Sobic001G470200--Sobic003G089300 Sobic001G470200--Sobic008G097700 Sobic001G434100 Sobic001G434100 Sobic001G470200--Sobic001G434100 Sobic003G089300--Sobic007G211200 Sobic009G060800 Sobic009G060800 Sobic003G089300--Sobic009G060800 Sobic010G192500 Sobic010G192500 Sobic003G089300--Sobic010G192500 Sobic003G089300--Sobic002G032500 Sobic003G089300--Sobic004G357000 Sobic003G089300--Sobic007G160300 Sobic001G286700 Sobic001G286700 Sobic003G089300--Sobic001G286700 Sobic003G089300--Sobic004G211700 Sobic001G155700 Sobic001G155700 Sobic003G089300--Sobic001G155700 Sobic003G366000 Sobic003G366000 Sobic001G390400--Sobic003G366000 Sobic005G163400 Sobic005G163400 Sobic001G390400--Sobic005G163400 Sobic006G050900 Sobic006G050900 Sobic001G390400--Sobic006G050900 Sobic002G050700 Sobic002G050700 Sobic001G390400--Sobic002G050700 Sobic001G390400--Sobic010G192500 Sobic001G390400--Sobic004G317200 Sobic002G319300 Sobic002G319300 Sobic001G390400--Sobic002G319300 Sobic010G024500 Sobic010G024500 Sobic001G390400--Sobic010G024500 Sobic006G142500 Sobic006G142500 Sobic001G390400--Sobic006G142500 Sobic003G291000 Sobic003G291000 Sobic006G241800--Sobic003G291000 Sobic006G241800--Sobic003G018700 Sobic006G241800--Sobic004G317200 Sobic004G164700 Sobic004G164700 Sobic006G241800--Sobic004G164700 Sobic006G241800--Sobic010G024500 Sobic002G311000 Sobic002G311000 Sobic006G241800--Sobic002G311000 Sobic006G241800--Sobic010G020600 Sobic001G381100 Sobic001G381100 Sobic006G241800--Sobic001G381100 Sobic001G074100 Sobic001G074100 Sobic006G241800--Sobic001G074100 Sobic001G046400 Sobic001G046400 Sobic007G211200--Sobic001G046400 Sobic007G211200--Sobic004G357000 Sobic007G211200--Sobic003G089300 Sobic007G211200--Sobic002G032500 Sobic007G211200--Sobic004G211700 Sobic004G342000 Sobic004G342000 Sobic007G211200--Sobic004G342000 Sobic007G211200--Sobic003G113500 Sobic001G135600 Sobic001G135600 Sobic007G211200--Sobic001G135600 Sobic002G337600 Sobic002G337600 Sobic007G211200--Sobic002G337600 Sobic007G160300--Sobic003G089300 Sobic007G160300--Sobic003G070600 Sobic007G160300--Sobic006G058000 Sobic007G160300--Sobic010G020600 Sobic001G074000 Sobic001G074000 Sobic007G160300--Sobic001G074000 Sobic003G309400 Sobic003G309400 Sobic007G160300--Sobic003G309400 Sobic007G160300--Sobic001G155700 Sobic007G160300--Sobic004G357000 Sobic001G493900 Sobic001G493900 Sobic007G160300--Sobic001G493900 Sobic006G058000--Sobic007G160300 Sobic006G058000--Sobic010G020600 Sobic010G078700 Sobic010G078700 Sobic006G058000--Sobic010G078700 Sobic006G058000--Sobic010G192500 Sobic006G058000--Sobic004G317200 Sobic006G058000--Sobic003G089300 Sobic006G058000--Sobic001G390400 Sobic006G058000--Sobic001G470200 Sobic006G058000--Sobic008G097700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.