Gene annotation
Transcriptome id Sobic.006G241800.1
Synonym
Functional annotation receptor kinase, putative, expressed
UniProt A0A1B6PNM5
Pfam PF00560 PF00069
Panther DB PTHR27008 PTHR27008:SF39
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT5G67200 : Leucine-rich repeat protein kinase family protein
RAP-DB (Rice) LOC_Os04g55620.1 : receptor kinase, putative, expressed
MaizeGDB (Corn) Zm00025a009536 , Zm00025a009535
Brachypodium KQJ84978
Barley HORVU2Hr1G113540.2 , HORVU2Hr1G113540.1 , HORVU6Hr1G094680.2 , HORVU6Hr1G094680.5
Wheat TraesCS2D02G513900 , TraesCS2A02G512500 , TraesCS2B02G540400 , TraesCS2B02G540400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G291000 protein kinase family protein, putative, expressed -
2 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
3 Sobic.004G317200 "Upregulated to a greater extent than that of SbER1 in stem in response to drouht stress, not expredded in roots. SbER2 fusion protein localized on the cell membrane and chloroplast. Net photosynthetic rate and WUE, phenylpropanoid biosynthetic genes expression, and lignin content increased in overexpressing maize."(PubMedID : 31615416)@receptor-like protein kinase 5 precursor, putative, expressed -
4 Sobic.004G164700 expressed protein -
5 Sobic.010G024500 expressed protein -
6 Sobic.002G311000 "Receptor-like kinase(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659859)@leucine-rich repeat family protein, putative, expressed -
7 Sobic.010G020600 Receptor-like protein kinase 5 precursor(PubMedID : 28620409)@receptor-like protein kinase 5 precursor, putative, expressed -
8 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
9 Sobic.001G074100 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
10 Sobic.002G164700 ZOS9-04 - C2H2 zinc finger protein, expressed -
11 Sobic.010G211800 TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
12 Sobic.002G045200 protein kinase, putative, expressed -
13 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
14 Sobic.003G041900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -
15 Sobic.009G235700 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
16 Sobic.003G307200 expressed protein -
17 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
18 Sobic.009G124800 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.001G461800 zinc finger family protein, putative, expressed -
20 Sobic.001G522300 leucine-rich repeat transmembrane protein kinase, putative, expressed -


Gene co-expression network
sample Sobic006G241800 Sobic006G241800 Sobic003G291000 Sobic003G291000 Sobic006G241800--Sobic003G291000 Sobic003G018700 Sobic003G018700 Sobic006G241800--Sobic003G018700 Sobic004G317200 Sobic004G317200 Sobic006G241800--Sobic004G317200 Sobic004G164700 Sobic004G164700 Sobic006G241800--Sobic004G164700 Sobic010G024500 Sobic010G024500 Sobic006G241800--Sobic010G024500 Sobic002G311000 Sobic002G311000 Sobic006G241800--Sobic002G311000 Sobic010G020600 Sobic010G020600 Sobic006G241800--Sobic010G020600 Sobic001G381100 Sobic001G381100 Sobic006G241800--Sobic001G381100 Sobic001G074100 Sobic001G074100 Sobic006G241800--Sobic001G074100 Sobic003G291000--Sobic006G241800 Sobic003G291000--Sobic002G311000 Sobic001G461800 Sobic001G461800 Sobic003G291000--Sobic001G461800 Sobic003G291000--Sobic001G074100 Sobic002G045200 Sobic002G045200 Sobic003G291000--Sobic002G045200 Sobic003G078300 Sobic003G078300 Sobic003G291000--Sobic003G078300 Sobic010G211800 Sobic010G211800 Sobic003G291000--Sobic010G211800 Sobic002G164700 Sobic002G164700 Sobic003G291000--Sobic002G164700 Sobic003G250000 Sobic003G250000 Sobic003G291000--Sobic003G250000 Sobic003G018700--Sobic010G020600 Sobic003G018700--Sobic006G241800 Sobic004G248100 Sobic004G248100 Sobic003G018700--Sobic004G248100 Sobic003G018700--Sobic002G164700 Sobic003G018700--Sobic001G381100 Sobic003G018700--Sobic004G317200 Sobic006G032800 Sobic006G032800 Sobic003G018700--Sobic006G032800 Sobic006G044200 Sobic006G044200 Sobic003G018700--Sobic006G044200 Sobic003G018700--Sobic001G074100 Sobic004G317200--Sobic010G020600 Sobic004G357000 Sobic004G357000 Sobic004G317200--Sobic004G357000 Sobic001G470200 Sobic001G470200 Sobic004G317200--Sobic001G470200 Sobic003G089300 Sobic003G089300 Sobic004G317200--Sobic003G089300 Sobic001G390400 Sobic001G390400 Sobic004G317200--Sobic001G390400 Sobic004G317200--Sobic006G241800 Sobic007G211200 Sobic007G211200 Sobic004G317200--Sobic007G211200 Sobic007G160300 Sobic007G160300 Sobic004G317200--Sobic007G160300 Sobic006G058000 Sobic006G058000 Sobic004G317200--Sobic006G058000 Sobic004G164700--Sobic006G241800 Sobic002G362700 Sobic002G362700 Sobic004G164700--Sobic002G362700 Sobic008G190000 Sobic008G190000 Sobic004G164700--Sobic008G190000 Sobic004G164700--Sobic001G461800 Sobic006G142500 Sobic006G142500 Sobic004G164700--Sobic006G142500 Sobic004G164700--Sobic010G024500 Sobic003G041900 Sobic003G041900 Sobic004G164700--Sobic003G041900 Sobic001G425700 Sobic001G425700 Sobic004G164700--Sobic001G425700 Sobic010G086000 Sobic010G086000 Sobic004G164700--Sobic010G086000 Sobic005G163400 Sobic005G163400 Sobic010G024500--Sobic005G163400 Sobic010G024500--Sobic008G190000 Sobic010G024500--Sobic001G390400 Sobic010G024500--Sobic006G241800 Sobic008G083500 Sobic008G083500 Sobic010G024500--Sobic008G083500 Sobic010G024500--Sobic001G381100 Sobic002G319300 Sobic002G319300 Sobic010G024500--Sobic002G319300 Sobic010G192500 Sobic010G192500 Sobic010G024500--Sobic010G192500 Sobic010G024500--Sobic004G164700 Sobic002G311000--Sobic006G241800 Sobic002G311000--Sobic003G291000 Sobic002G311000--Sobic003G078300 Sobic002G142500 Sobic002G142500 Sobic002G311000--Sobic002G142500 Sobic002G311000--Sobic002G045200 Sobic002G311000--Sobic010G211800 Sobic002G311000--Sobic001G074100 Sobic010G165100 Sobic010G165100 Sobic002G311000--Sobic010G165100 Sobic006G257200 Sobic006G257200 Sobic002G311000--Sobic006G257200 Sobic010G020600--Sobic004G317200 Sobic010G020600--Sobic004G248100 Sobic003G339600 Sobic003G339600 Sobic010G020600--Sobic003G339600 Sobic003G070600 Sobic003G070600 Sobic010G020600--Sobic003G070600 Sobic009G235700 Sobic009G235700 Sobic010G020600--Sobic009G235700 Sobic010G020600--Sobic007G160300 Sobic010G020600--Sobic003G018700 Sobic008G097700 Sobic008G097700 Sobic010G020600--Sobic008G097700 Sobic001G221900 Sobic001G221900 Sobic010G020600--Sobic001G221900 Sobic001G381100--Sobic008G190000 Sobic001G160000 Sobic001G160000 Sobic001G381100--Sobic001G160000 Sobic001G381100--Sobic001G074100 Sobic006G074900 Sobic006G074900 Sobic001G381100--Sobic006G074900 Sobic005G092700 Sobic005G092700 Sobic001G381100--Sobic005G092700 Sobic004G168600 Sobic004G168600 Sobic001G381100--Sobic004G168600 Sobic001G381100--Sobic010G024500 Sobic001G381100--Sobic006G241800 Sobic003G366000 Sobic003G366000 Sobic001G381100--Sobic003G366000 Sobic001G074100--Sobic001G381100 Sobic003G031700 Sobic003G031700 Sobic001G074100--Sobic003G031700 Sobic001G074100--Sobic002G362700 Sobic001G074100--Sobic006G241800 Sobic001G074100--Sobic010G211800 Sobic001G074100--Sobic002G045200 Sobic001G074100--Sobic003G291000 Sobic009G124800 Sobic009G124800 Sobic001G074100--Sobic009G124800 Sobic010G211700 Sobic010G211700 Sobic001G074100--Sobic010G211700
Octagon: transcription factors


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