Gene annotation
Transcriptome id Sobic.009G124800.1
Synonym Sb09g019240
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YXH4
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF153
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G45290 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g32350.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037609 , Zm00025a043546
Brachypodium KQK06504
Barley HORVU1Hr1G056430.5 , HORVU1Hr1G056430.1 , HORVU1Hr1G056430.3 , HORVU1Hr1G056430.2 , HORVU1Hr1G056430.4
Wheat TraesCS1D02G243200 , TraesCS1A02G243200 , TraesCS1A02G243200 , TraesCS1B02G254700
Populus -


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cDNA sequences
Sobic.009G124800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G272500 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@expressed protein -
2 Sobic.002G293700 ATXR, putative, expressed -
3 Sobic.001G074100 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
4 Sobic.001G296100 DUF630/DUF632 domains containing protein, putative, expressed -
5 Sobic.001G381100 receptor-like protein kinase precursor, putative, expressed -
6 Sobic.006G241800 receptor kinase, putative, expressed -
7 Sobic.010G211800 TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
8 Sobic.002G370400 expressed protein -
9 Sobic.004G115700 extra-large G-protein-related, putative, expressed -
10 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
11 Sobic.005G092700 expressed protein -
12 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
13 Sobic.010G024500 expressed protein -
14 Sobic.004G168600 heat shock protein-related, putative, expressed -
15 Sobic.010G211700 - -
16 Sobic.006G112800 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
17 Sobic.004G199700 expressed protein -
18 Sobic.006G257200 kinesin motor domain containing protein, putative, expressed -
19 Sobic.003G018700 CIN-like (ClassII) Subclade 17 TCP(PubMedID : 21444336)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
20 Sobic.010G010900 expressed protein -


Gene co-expression network
sample Sobic009G124800 Sobic009G124800 Sobic006G272500 Sobic006G272500 Sobic009G124800--Sobic006G272500 Sobic002G293700 Sobic002G293700 Sobic009G124800--Sobic002G293700 Sobic001G074100 Sobic001G074100 Sobic009G124800--Sobic001G074100 Sobic001G296100 Sobic001G296100 Sobic009G124800--Sobic001G296100 Sobic001G381100 Sobic001G381100 Sobic009G124800--Sobic001G381100 Sobic006G241800 Sobic006G241800 Sobic009G124800--Sobic006G241800 Sobic010G211800 Sobic010G211800 Sobic009G124800--Sobic010G211800 Sobic002G370400 Sobic002G370400 Sobic009G124800--Sobic002G370400 Sobic004G115700 Sobic004G115700 Sobic009G124800--Sobic004G115700 Sobic006G272500--Sobic009G124800 Sobic001G285200 Sobic001G285200 Sobic006G272500--Sobic001G285200 Sobic006G272500--Sobic002G293700 Sobic010G010900 Sobic010G010900 Sobic006G272500--Sobic010G010900 Sobic002G419200 Sobic002G419200 Sobic006G272500--Sobic002G419200 Sobic006G272500--Sobic001G296100 Sobic007G160300 Sobic007G160300 Sobic006G272500--Sobic007G160300 Sobic006G272500--Sobic002G370400 Sobic008G148500 Sobic008G148500 Sobic006G272500--Sobic008G148500 Sobic002G293700--Sobic006G272500 Sobic002G293700--Sobic009G124800 Sobic006G257200 Sobic006G257200 Sobic002G293700--Sobic006G257200 Sobic002G293700--Sobic006G241800 Sobic002G071850 Sobic002G071850 Sobic002G293700--Sobic002G071850 Sobic002G293700--Sobic001G285200 Sobic002G293700--Sobic002G370400 Sobic008G169400 Sobic008G169400 Sobic002G293700--Sobic008G169400 Sobic003G031700 Sobic003G031700 Sobic002G293700--Sobic003G031700 Sobic001G074100--Sobic001G381100 Sobic001G074100--Sobic003G031700 Sobic002G362700 Sobic002G362700 Sobic001G074100--Sobic002G362700 Sobic001G074100--Sobic006G241800 Sobic001G074100--Sobic010G211800 Sobic002G045200 Sobic002G045200 Sobic001G074100--Sobic002G045200 Sobic003G291000 Sobic003G291000 Sobic001G074100--Sobic003G291000 Sobic001G074100--Sobic009G124800 Sobic010G211700 Sobic010G211700 Sobic001G074100--Sobic010G211700 Sobic001G296100--Sobic006G272500 Sobic001G499200 Sobic001G499200 Sobic001G296100--Sobic001G499200 Sobic001G296100--Sobic009G124800 Sobic006G142500 Sobic006G142500 Sobic001G296100--Sobic006G142500 Sobic003G283600 Sobic003G283600 Sobic001G296100--Sobic003G283600 Sobic001G290500 Sobic001G290500 Sobic001G296100--Sobic001G290500 Sobic004G315700 Sobic004G315700 Sobic001G296100--Sobic004G315700 Sobic001G487200 Sobic001G487200 Sobic001G296100--Sobic001G487200 Sobic001G372900 Sobic001G372900 Sobic001G296100--Sobic001G372900 Sobic008G190000 Sobic008G190000 Sobic001G381100--Sobic008G190000 Sobic001G160000 Sobic001G160000 Sobic001G381100--Sobic001G160000 Sobic001G381100--Sobic001G074100 Sobic006G074900 Sobic006G074900 Sobic001G381100--Sobic006G074900 Sobic005G092700 Sobic005G092700 Sobic001G381100--Sobic005G092700 Sobic004G168600 Sobic004G168600 Sobic001G381100--Sobic004G168600 Sobic010G024500 Sobic010G024500 Sobic001G381100--Sobic010G024500 Sobic001G381100--Sobic006G241800 Sobic003G366000 Sobic003G366000 Sobic001G381100--Sobic003G366000 Sobic006G241800--Sobic003G291000 Sobic003G018700 Sobic003G018700 Sobic006G241800--Sobic003G018700 Sobic004G317200 Sobic004G317200 Sobic006G241800--Sobic004G317200 Sobic004G164700 Sobic004G164700 Sobic006G241800--Sobic004G164700 Sobic006G241800--Sobic010G024500 Sobic002G311000 Sobic002G311000 Sobic006G241800--Sobic002G311000 Sobic010G020600 Sobic010G020600 Sobic006G241800--Sobic010G020600 Sobic006G241800--Sobic001G381100 Sobic006G241800--Sobic001G074100 Sobic010G211800--Sobic010G211700 Sobic002G360500 Sobic002G360500 Sobic010G211800--Sobic002G360500 Sobic002G417000 Sobic002G417000 Sobic010G211800--Sobic002G417000 Sobic010G211800--Sobic003G031700 Sobic010G211800--Sobic002G045200 Sobic010G211800--Sobic001G074100 Sobic010G211800--Sobic002G362700 Sobic010G211800--Sobic006G241800 Sobic008G096200 Sobic008G096200 Sobic010G211800--Sobic008G096200 Sobic002G370400--Sobic001G487200 Sobic001G231200 Sobic001G231200 Sobic002G370400--Sobic001G231200 Sobic002G370400--Sobic004G315700 Sobic002G370400--Sobic006G272500 Sobic009G212100 Sobic009G212100 Sobic002G370400--Sobic009G212100 Sobic001G296800 Sobic001G296800 Sobic002G370400--Sobic001G296800 Sobic002G370400--Sobic009G124800 Sobic003G153900 Sobic003G153900 Sobic002G370400--Sobic003G153900 Sobic002G370400--Sobic010G211800 Sobic009G200000 Sobic009G200000 Sobic004G115700--Sobic009G200000 Sobic008G042200 Sobic008G042200 Sobic004G115700--Sobic008G042200 Sobic004G115700--Sobic005G092700 Sobic004G115700--Sobic008G190000 Sobic006G240900 Sobic006G240900 Sobic004G115700--Sobic006G240900 Sobic010G106100 Sobic010G106100 Sobic004G115700--Sobic010G106100 Sobic006G110850 Sobic006G110850 Sobic004G115700--Sobic006G110850 Sobic004G115700--Sobic003G366000 Sobic004G115700--Sobic009G124800
Octagon: transcription factors


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